Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0630 ATGAGGGCCATTGCGTGTGGGTTGGCTGTCTCTCTGTCGTTTCGCCGGCCAACGGCCAACAAAGCATTATTACCGTCTCAAGACTTAAATATCTCATTTTCCTTAGCTTTCCCTTTCCTTGCTTTGGACGATCTCTCTCTTTCTTTCTCTGAACCCGCCTTTGATTTGATCAAGATGAACGACCTGCTTACTGATTCATTTGTTGGTGACAGTAAAGGTCAGCCTTCTAGACAAAGCGATATTGAGATGGGAATGCAGGTTCCAAGGAGCAACTCTGATATGGGAATGGAAACTTTTAATAAGCAGATTCAAGAGGCTGATAAACAGGTTGATAAGCTATCTGGGCTACTAAAAAAACTGAAGGAAGCTAATGAAGAGTCAAAATCTGTTACCAAAGCTTCTGCCATGAAAGCTATCAAGAAGAGGATGGAGAAAGACATTGACGAAGTTGGAAAGATTGCACGTACAGTCAAAGCAAAAATAGAAGCTATAAGCAAAGACAACCTAGCCAACAGACAAAAGCCTGGTTGTGAGAAGGGAACTGGTATTGACAGAGCTAGGATGAATATGACAAATGCCTTGACAAAAAAGTTCAAGGATCTAATGACTGAGTTTCAGACTCTTAGACAAAGAATTCATGATGAATATCGGGAGGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGACCAGATGATGAGACGATTGACCACCTGATAGAAACTGGAAACAGTGAACAAATCTTCCAGAAGGCAATTTTAGAAACAGGCCGAGGACAGGTGTTAAATACCCTGGAAGAAATTCAGGAGAGACATGATGCAGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTACATCAGATTTACCTCGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTCAACAATGCAGTCGATCATGTCCAGAGAGGGACATCTGCCCTTCAAACTGCTAAGAAACACCAGAAGAATTCTCGAAAATGGATGTGCATTGCCATCATTATACTCTTGATAATTGTAGCTGTTATAGTTGTTGGTGTTCTCAAACCTTGGAAAAGTAACAAGGGCGCTTGA 1104 0.4103 MRAIACGLAVSLSFRRPTANKALLPSQDLNISFSLAFPFLALDDLSLSFSEPAFDLIKMNDLLTDSFVGDSKGQPSRQSDIEMGMQVPRSNSDMGMETFNKQIQEADKQVDKLSGLLKKLKEANEESKSVTKASAMKAIKKRMEKDIDEVGKIARTVKAKIEAISKDNLANRQKPGCEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIHDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQKAILETGRGQVLNTLEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQTAKKHQKNSRKWMCIAIIILLIIVAVIVVGVLKPWKSNKGA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0630 367 Pfam SNARE domain 302 354 IPR000727 -
Glsi04g0630 367 Pfam Syntaxin 99 301 IPR006011 GO:0016020
Glsi04g0630 367 FunFam Syntaxin 132 91 220 - -
Glsi04g0630 367 FunFam Syntaxin 132 259 359 - -
Glsi04g0630 367 SMART SynN_4 91 217 IPR006011 GO:0016020
Glsi04g0630 367 CDD SynN 96 253 IPR006011 GO:0016020
Glsi04g0630 367 SUPERFAMILY t-snare proteins 93 321 IPR010989 GO:0016020|GO:0016192
Glsi04g0630 367 Coils Coil 96 133 - -
Glsi04g0630 367 Gene3D - 91 220 - -
Glsi04g0630 367 CDD SNARE_syntaxin1-like 265 327 - -
Glsi04g0630 367 SMART tSNARE_6 261 328 IPR000727 -
Glsi04g0630 367 Gene3D - 259 359 - -
Glsi04g0630 367 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 266 328 IPR000727 -
Glsi04g0630 367 PANTHER SYNTAXIN 95 346 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0630 Glsi-ChrGlsi04 4347688 4353327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0630 59 367 SNARE and Associated Proteins AT3G03800 62.379 1.59e-126 364