Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0627 ATGCCTGCCGGTATTATGATTCCGGCTAGAAACATGCCCTCGATCATTGGAAGGAACAACAACGTTGGTGTATTTGGATCATCCTCAGGCCTTACTCTTGGTCAGCCAAACATGATGGAAGGTCATCAGCTCCATCCACTGGACATGGCTCCCAACACATCGGAAAGTGATATCCCCCGAATCCGAGACGATGACTTCGACAGTGCCACTAAGTCCGGAAGTGAAAACCAGGAAGGTGCCTCCGGCGACGATCAAGATCCACGCCCCAAAAAGAAGCGATACCACCGCCATACCCAACACCAGATCCAGGAAATGGAAGCCTTCTTTAAGGAGTGCCCACACCCAGATGACAAGCAAAGGAAGGAGCTGAGTCGAGAATTAGGGCTAGAGCCACTGCAGGTCAAGTTCTGGTTCCAAAACAAGCGCACACAGATGAAGACCCAACATGAGCGCCATGAGAACACACACCTTAGAAACGAAAATGAAAAGCTTCGTGCCGATAACATGAGGTACAGAGAAGCTCTTAGCAATGCCTCGTGTCCTAATTGTGGTGGACCAACCGCTATAGGTGAAATGTCCTTTGATGAGCATCATTTGAGACTCGAAAATGCCCGTCTAAGAGAAGAGATTGATCGGATTTCAGCAATTGCTGCCAAGTACGTGGGCAAGCCTGTGGTGAACTATCCCCTACTTTCTCCTTCTTCAGTTCCTCCTCGTCCACTAGAACTTGGGGTTGGTGGTGGTTTTGGCGGGCAGGCAGGCATTGGTGGGGATATGTACGGAGCTGGAGATCTTCTTAGGTCAATCAGTGGGCTCACCGAAGCCGACAAACCAATGATAATCGAGCTTGCTGTAGCAGCAATGGAGGAACTTGTCAGAATGGCACAAATGGGTGAGCCTCTTTGGATGACCACCCTCGATGGCACCACCAGTGTGCTAAATGAAGATGAATACATCCGGTCGTTTCCCCGAGGAATTGGCCCAAAACCTAGTGGCTTGAAATGTGAAGCTTCACGAGAATCTGCTGTTGTCATAATGAACCATATCAACCTTGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTTTCTGGCATAGTCTCAAGAGCCATGACTATGGAAGTACTATCAACGGGAGTGGCTGGAAACTACAACGGTGCCTTGCAAGTGATGACAGCAGAGTTGCAAGTACCTTCACCCCTTGTGCCAACTCGAGAGAGTTATTTCGTGAGGTATTGCAAACAGCACGCTGACGGGACTTGGGCAGTAGTGGATGTGTCTTTGGACAATTTGCGCCTTACTCCTTCCGTTCGGTGTAGAAGAAGGCCTTCTGGTTGCTTGATTCAAGAAATGCCCAATGGCTATTCAAAGGTAACATGGATTGAGCATGTAGAAGTGGACGACAGAGGGGTTCATAATCTATACAAGCATCTTGTAAGTTCTGGGCATGCATTTGGAGCAAAACGTTGGGTTGCAACCTTGGACCGACAGTGTGAACGGCTTGCTAGTGCCTTGGCATCGAACATTCCGACCGGAGATGTTGGGGTGATAACAAACCAAGATGGGAGGAGAAGTATGTTGAAACTGGCAGAGAGAATGGTTATAAGCTTCTGTGCTGGAGTGAGTGCTTCTACTGCTCACACGTGGACTACACTCTCTGGAACTGGGGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTGGATGACCCGGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCAACTTCTTTCTGGCTTCCAGTTCCCCCAAATAGAGTTTTTGATTTCCTCCGCGATGAAAACTCCCGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTGGTCCAAGAAATGGCGCACATAGCTAATGGAAGAGACACAGGAAATTGTGTGTCTCTACTTCGAGTGAATAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCACCGACTCAACGGGCTCTTTTGTAATTTATGCTCCTGTTGATATAGTTGCCATGAACGTAGTTCTAAATGGAGGGGACCCAGACTATGTGGCCCTTCTTCCTTCAGGATTTGCTATCCTCCCAGATGGAACAACAGCACATGGAGGCGGCATTGGTGAAACTGGGCATGGGGGATCTCTCTTGACAGTTGCATTTCAAATTTTGGTTGATTCAGTTCCTACAGCAAAGCTTTCTCTTGGATCTGTTGCTACCGTCAATAATCTTATTGCTTGCACTGTTGAGAGAATCAAGGCTTCTTTATCTTGTGAAGCTGCTTGA 2286 0.4799 MPAGIMIPARNMPSIIGRNNNVGVFGSSSGLTLGQPNMMEGHQLHPLDMAPNTSESDIPRIRDDDFDSATKSGSENQEGASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTHLRNENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPSSVPPRPLELGVGGGFGGQAGIGGDMYGAGDLLRSISGLTEADKPMIIELAVAAMEELVRMAQMGEPLWMTTLDGTTSVLNEDEYIRSFPRGIGPKPSGLKCEASRESAVVIMNHINLVEILMDVNQWSTVFSGIVSRAMTMEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRLTPSVRCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDRGVHNLYKHLVSSGHAFGAKRWVATLDRQCERLASALASNIPTGDVGVITNQDGRRSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPNRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0627 761 SUPERFAMILY Bet v1-like 522 753 - -
Glsi04g0627 761 ProSiteProfiles START domain profile. 273 505 IPR002913 GO:0008289
Glsi04g0627 761 MobiDBLite consensus disorder prediction 57 71 - -
Glsi04g0627 761 Gene3D - 76 165 - -
Glsi04g0627 761 SMART HOX_1 89 152 IPR001356 GO:0003677
Glsi04g0627 761 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Glsi04g0627 761 FunFam Homeobox-leucine zipper protein HDG1 76 164 - -
Glsi04g0627 761 SMART START_1 282 502 IPR002913 GO:0008289
Glsi04g0627 761 CDD homeodomain 91 149 IPR001356 GO:0003677
Glsi04g0627 761 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Glsi04g0627 761 Gene3D - 350 496 IPR023393 -
Glsi04g0627 761 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 88 756 IPR042160 -
Glsi04g0627 761 Pfam START domain 283 502 IPR002913 GO:0008289
Glsi04g0627 761 SUPERFAMILY Homeodomain-like 78 148 IPR009057 -
Glsi04g0627 761 MobiDBLite consensus disorder prediction 33 99 - -
Glsi04g0627 761 FunFam Homeobox-leucine zipper protein GLABRA 2 282 501 - -
Glsi04g0627 761 CDD START_ArGLABRA2_like 277 501 - -
Glsi04g0627 761 Coils Coil 154 174 - -
Glsi04g0627 761 Pfam Homeodomain 91 146 IPR001356 GO:0003677
Glsi04g0627 761 SUPERFAMILY Bet v1-like 274 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0627 Glsi-ChrGlsi04 4326062 4330180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0627 61 761 Homeobox Transcription Factor Family AT1G05230 82.578 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi04g0627 START 6.9e-60 CL0209