Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0623 ATGCCCTGTCAGGGGGAACAATTGGTAAATGCTACTGGTACGGGGCTATTCCTCCAGTTTCTTCTTGTGGTGGTTAGAGAAGAATTGGACCAACCCTTCTGTCTTGCCAAATTGTGGGGGAATTCAAAGCTGTTCCAAGCTTTTATCAGTGTTTCGCCTTCGGGTAAGCTCAGATGCTCTCCTTCGCCTAACTTCTTCTTGAGAGTTTCTGAGCTAGATTGGGCTATGCTGGTTGATTATTGCTTTCTTTTGTTCGTTTCTGTGCTCCTGAAATGGTTGACACTTGACAGATGCTGGTTTAAACTGAAGAATCGTAACGGCAGATTGCTGGATTTTCCAGCTTTTCTTAAAGCGGAGGAACTCTTGATTACGAGGCAAGGCCGCATGGTTATGGCTTGGACATTTTTCCTCTTGGTTTTCTGCTTGTGGATTCCCACAGAAGTGGTGGGTAGGACTGGAAATAGCGTTGCCAATAATACTAAAGTTCCCTCAAGACCAAGTGTTGTGAAAATAGGAGCACTGCTTACTTTTAATTCGGTCATTGGAAGATCGGCTAAACCTGCAATTTCAGCTGCCATTGATGATGTTAATTCTGATACAAGCATTCTCCCTGGTATGAAACTGGAAGTTATTCTACGTGATACAAACTGCAGTGAGTTTTTCGGAACAGTGGAAGCTCTGCAGTTGATGGAGAATGACATAGTTGCTGCTGTTGGTCCACTGTCATCTGGAATAGCTCATGTCATCTCGCATGTTGTTAATGAACTCCATGTACCTCTTTTGTCATTTGGGGCAACAGATCCTACTCTTTCTTCCCTGCAGTATCCATATTTTATCCGCACTACCCAGAATGACTATTTTCAGATGTGTGCAATTGCAGACTTGATTGACTATTACGGATGGAGGGAGGTAATTGCCATTTACGTAGATGATGATAATGGAAGAAATGGGATTTCTGCATTGGGCGATGCCTTGGCAAAGAAGCGTGCCAAGATCTCTTATAAAGCCGCCTTTTCTCCTGGAGCCCCCATGGCTAATATTAGTGACTTGTTAAATGGAGTAAACTTAATGGAATCACGAGTCTATGTTCTGCATGTTAACCCTGATTTTGGGTTGAACATTTTTTCTGCTGCCAAGAAGATAGGGATGATGAACAGTGGCTATGTTTGGATTGCAACAGACTGGCTTCCTTCAGTGCTAGATGCATCAGAACCAATTAACCCTGACATAATGAATGTCTTACAAGGTGTTGTTGCTTTACGCCATCATACTCCCAACTCTGACCTCAAGAAGAACTTTATCTCTAGGTTGAAAAACCTTAAAGACAAGGAGACTGCAAGCTTCAATTCTTATGCACTATATGCTTATGATTCGGTTTGGTTAGCAGCCCGTGCTCTTGATGTTTTTCTTAATGAAGGTGGAAATATATCTTTCTCCAGTGACCCCAGATTGCATGACACAAATGGAAGCATGTTGCATTTAGCATCCCTACGTACTTTTGATGGTGGCCCACTGTTTCTCCAGAAAATCCTGAAAATGAACTTCACTGGTCTGAGTGGTCAAATTCAGTTTGATGTGGACAAGAATTTGATTCATCCAGCTTATGATATTCTAAACATTGGGGGAGCTGCCCGTAGAATAGGTTATTGGTCTAATTACTCAGGTCTGTCAGTTGTAGCTCCTGAAATTTTATATACAAAGCCTCCTAACACTTCAACTAGCAATCAACATCTTTACAGTGTGATATGGCCCGGAGAGACTACAACTAAACCTAGGGGATGGGTATTCCCCAATAATGGAAAGCCACTGCGAATAGCAGTGCCAAACCGAATAAGCTACTTGGAGTTTGTTGCCAAAGACAAGAACCCCCCAGGGGTAAAAGGCTTTTGCATTGATGTGTTTGAGGCAGCCTTAAATCTGTTGCCTTATCCTGTCCCGCATCAATATATATTATATGGGCATGGTGATAGAAATCCTAACTACGATCAACTAGTGAATGCGGTTGCACAAAATAATTTTGATGCAGCTGTAGGAGATGTTACAATTGTGACAAATAGGACAAGGGTTGTGGATTTTACTCAACCTTTCATGGAATCAGGGTTGGTTGTAGTTGTTCCTCTCAAGGAGGTGAAGTCAAGCCCTTGGTCATTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTCACCGGTGCCTTCTTTCTTTTTGTGGGAGCTGTTGTATGGATTCTCGAGCACCGGCTCAATCATGAGTTCCGTGGTCCACCAAGGAAACAGCTCATGACAATTTTTTGGTTTAGCTTCTCAACAATGTTTTTCTCACACAGAGAAAACACAGTGAGCACTCTGGGGCGGTTGGTGTTAATAATATGGCTTTTCGTGGTGTTAATTATTAATTCAAGCTACACTGCTAGCTTGACATCGATCCTCACAGTGCAGCAACTTTCATCGCAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTCAACCTATTGGAATTCAAGACGGGTCATTTGCACGGAAGTATCTGATAGATGAGCTCAATATAGCTGAATCTAGAATTGTAACACTGAAAAACCAGGAGGCTTATATTGATGCCCTCCAGCGTGGACCAAAAGGTGGAGGGGTAGTGGCTGTTGTTGATGAGCTTCCTTATATTGAGCTGCTCATGTCCAACACCCATTGTCAGTTCAGAACAGTAGGGCAGGAGTTCACTAAAAGCGGATGGGGATTTGCGTTCCAGAGGGACTCTCCCCTTGCAGTGGACATGTCGACTGCCATTCTTCAACTCTCCGAAAATGGTGACCTGCAAAAGATCCATGACAAATGGCTCTCAAAAAACAGCTGTCCTGCACAAGCCAATGATGTTGATTCGAACCAACTATCTCTGAGTAGCTTCTGGGGCCTCTTTCTGATATGTGGGATTGCATGTTTCCTTGCTCTGATTGTGTTCTTTGTTAGGGTGTTTTGTCAATATACCAAGTATAGCCCAGAGGCTGATGAGGAGGCTAATGAGGCAATTGAGCCACCCAGGTCTAGAAGGACAAGCAGAACCACTAGCTTCAAGGACCTGATTGGTTTTGTAGATAAAAAGGAAGCAGAGATAAAGGAGATGCTCAGGCAAAAAAATAAGAAAAGGCGACGCAGCCAGAGCCTAGAGTTAGACAGGCAATCCAATTTTTAA 3183 0.4317 MPCQGEQLVNATGTGLFLQFLLVVVREELDQPFCLAKLWGNSKLFQAFISVSPSGKLRCSPSPNFFLRVSELDWAMLVDYCFLLFVSVLLKWLTLDRCWFKLKNRNGRLLDFPAFLKAEELLITRQGRMVMAWTFFLLVFCLWIPTEVVGRTGNSVANNTKVPSRPSVVKIGALLTFNSVIGRSAKPAISAAIDDVNSDTSILPGMKLEVILRDTNCSEFFGTVEALQLMENDIVAAVGPLSSGIAHVISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMCAIADLIDYYGWREVIAIYVDDDNGRNGISALGDALAKKRAKISYKAAFSPGAPMANISDLLNGVNLMESRVYVLHVNPDFGLNIFSAAKKIGMMNSGYVWIATDWLPSVLDASEPINPDIMNVLQGVVALRHHTPNSDLKKNFISRLKNLKDKETASFNSYALYAYDSVWLAARALDVFLNEGGNISFSSDPRLHDTNGSMLHLASLRTFDGGPLFLQKILKMNFTGLSGQIQFDVDKNLIHPAYDILNIGGAARRIGYWSNYSGLSVVAPEILYTKPPNTSTSNQHLYSVIWPGETTTKPRGWVFPNNGKPLRIAVPNRISYLEFVAKDKNPPGVKGFCIDVFEAALNLLPYPVPHQYILYGHGDRNPNYDQLVNAVAQNNFDAAVGDVTIVTNRTRVVDFTQPFMESGLVVVVPLKEVKSSPWSFLKPFTAQMWCVTGAFFLFVGAVVWILEHRLNHEFRGPPRKQLMTIFWFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTQPIGIQDGSFARKYLIDELNIAESRIVTLKNQEAYIDALQRGPKGGGVVAVVDELPYIELLMSNTHCQFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLSKNSCPAQANDVDSNQLSLSSFWGLFLICGIACFLALIVFFVRVFCQYTKYSPEADEEANEAIEPPRSRRTSRTTSFKDLIGFVDKKEAEIKEMLRQKNKKRRRSQSLELDRQSNF 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0623 1060 CDD GluR_Plant 601 944 - -
Glsi04g0623 1060 FunFam Glutamate receptor 598 714 - -
Glsi04g0623 1060 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 242 270 - -
Glsi04g0623 1060 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 455 467 - -
Glsi04g0623 1060 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 182 198 - -
Glsi04g0623 1060 MobiDBLite consensus disorder prediction 1039 1060 - -
Glsi04g0623 1060 CDD PBP1_GABAb_receptor_plant 170 560 IPR044440 -
Glsi04g0623 1060 Pfam Ligand-gated ion channel 946 977 IPR001320 GO:0015276|GO:0016020
Glsi04g0623 1060 Pfam Receptor family ligand binding region 186 540 IPR001828 -
Glsi04g0623 1060 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 169 1012 IPR015683 -
Glsi04g0623 1060 FunFam Glutamate receptor 284 448 - -
Glsi04g0623 1060 Gene3D - 284 556 - -
Glsi04g0623 1060 Gene3D - 836 948 - -
Glsi04g0623 1060 Gene3D - 188 532 - -
Glsi04g0623 1060 FunFam Glutamate receptor 714 844 - -
Glsi04g0623 1060 Gene3D - 714 835 - -
Glsi04g0623 1060 Gene3D - 598 713 - -
Glsi04g0623 1060 SUPERFAMILY Periplasmic binding protein-like I 164 595 IPR028082 -
Glsi04g0623 1060 FunFam Glutamate receptor 840 948 - -
Glsi04g0623 1060 SUPERFAMILY Periplasmic binding protein-like II 578 946 - -
Glsi04g0623 1060 SMART GluR_14 604 946 IPR001320 GO:0015276|GO:0016020
Glsi04g0623 1060 Coils Coil 1028 1055 - -
Glsi04g0623 1060 PIRSF IGluLR_plant 128 1059 IPR017103 -
Glsi04g0623 1060 Pfam Bacterial extracellular solute-binding proteins, family 3 620 945 IPR001638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0623 Glsi-ChrGlsi04 4309660 4316407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0623 165 911 Ion Channels AT1G05200 70.588 0.0 1137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1449 14 15041731 15054378 Glsi04g0623 04 4309660 4316407 CCT
Glsi04g0623 04 4309660 4316407 Glsi14g1450 14 15068520 15073203 CCT
Glsi04g0623 04 4309660 4316407 Glsi04g0623 04 4309660 4316407 ECH