Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0622 ATGGAAAAGCTTCTTAGTTTGCCCCTTGTGATTTGGATATGGGTATTCTTCCTAGGTGGTATTGCTCGCTGCCAAAGGCCTCCTACTATAAATATTGCTGCAGTTTTCACTTTTAATTCGGTCATAGGTAAAGCTGCAAAGTCGGCTATGGAAATGGCTGTTTCTGATGTCAACGCAGACCCCAGAGTTCTCAATGGAACGAAACTAAAGTTGATAATGGAGGATGCCGGTTGCAACGTCTTCTTGGGAGCAATCGGAGCTTTTCGGGCACTGGAGAAAGGGGTTGCAGCCATAATTGGCCCACAATCATCTTCCATAGCTCAGATGATTTCTCAAATTGCTAATGGTCTCCAGGTTCCTTTAATTTCATATGCTGCCACTGATCCAACCCTCTCCTCACTGCAGTTTCCTTTTTTTTTTCGTACTGTACAAAGTGACTCCGTACAAATGTCTGCAATGGCTGATCTTATTGACTTCTATGGATGGAAGGAGGTGATTGCTGTCTTCTTGGATGATGATTTTGGAAGAAATGGAATATCTGCTTTGGATGATGAACTTGTAAAAAGAAGACTGAGAAGTGCTCACAAATTACCTTTGAGTGTTCGGTTTGATCCGGATGAAATCACTCACTTGCTTAATCAATCCAAACTGTTTGGTCCTCGTGTCTATGTCCTTCACGTTAATATGGATCCAAGATTGAGGATTTTCACCATAGCTCACAAACTTCAAATGATGGCCAGTGACTATGTCTGGCTTGCTACAGATTGGCTCTCTACAACTCTAGATTCATTCTCCCCTGTAAACAAAAATTTCCCTCTTGGCATCCTCCAAGGGGTGGTTGGATTTCGACCTCACGTTCCAGATTCTAGCCAGAAGAGAGCTTTTGTTTCTAGGTGGATGGAAATGCAGAAAGAAGGTGCAGTAACCAGTGGCTTGAATTCCTATGGATTATATGCTTATGATACAATCTGGGTAGCTGCACTTTCAATTGATAAGTTCATTAAAGTCCACAAAAATATTTCATTTTCTTCCAATGGTGACTATAAGCAAACAGAAGAATCTGATATTCAGCTTGACAAGCTCAAAGTCTTCGCCGGTGGATCTGATCTGGTCAACATATTACTACAATCAAATTTTGCTGGTGTGAGTGGTCAATTTCAGTTTAATTCAGACAGGAACATTATAAGTAGTGGTTATGATGTTATCAATATCAATCAGATGGCGATTACTAGGGTTGGTTATTGGTCTAGAAATTCAGGATTTTCAGTTGTACCTCCTGAAAAGCTCAAAAGGGAAGAACATGGCAGTTTTTACCAAAACCAGAAACTTGAAAATATTACTTGGCCAGGTGGAAAGAAAGGAAAACCACGTGGCTGGGTGATTGCTGATAATGCAAGACCACTGAGAATTGGAGTGCCCAAGAGAGCAAGTTTTGTTGAATTTGTCACTGAACTGCCAAGTCATCAAATTCAAGGTTACTGCATTGATGTCTTTAAGAAAGCACTAGAATTCATACCATATCATGTTCCTTATGTTTTGGAGCCTTTTGGAGATGGTCATTCAAATCCCAATTATGATGCACTTGTGAAGATGGTTGCTGCAAACTTATATGATGCAGTTGTTGGAGATGTAGCAATAGTGACGAACCGAACAAAGTTTGTGGATTTTTCTCAGCCTTTTGTAACAACTGGCCTTGTCATAGTGGCTCCAATAAAAAATGCAAAATCAAGTTCTTGGGTGTTTCTTAAACCATTTACAGCAGATATGTGGTGTGCCACTGCAGCGTCATTTATAATGATTGGAGTGGTTATATGGATTCTTGAGCACCGAGTCAACGACGATTTTCGTGGTCCTCCTAAGAGGCAAATTGCGACCATTTTCATTTTTAGCCTCTCAACACTGTTTAAGACAAATAAGGAAAAGACAGTAAGCACACTTGGTCGAATGGTAATGATAACATGGCTTTTCCTATTGATGGTGATCACATCTAGCTACACAGCAAGCTTGACTTCAATTCTTACCGTGGAACAGCTTTCATCACCCATCACGGGAATTGACAGTTTGATTGAAAGTAACTGGCCTATAGGGTTCCAAGTAGGTTCATTTGCTTACAGCTATCTCAAAGACAGTCTATCCGTACCCAAATCAAGACTTGTTCCTTTAGGTTCCCCTGAGGCATATGAAAGAGCTCTTCGGCAGGGGCCTTCTGGTGGAGGGGTTGCAGCTATCATAGATGAGCTTCCATATGTGGAGTTATTTCTCTCAACACAAACTGATTTTGCTATTATTGGGCAGCCATTCGCCAGAAGCATGTGGGGATTTGCTTTTCAAAGACAGTCTCCTCTTGCTGTTGACATGTCTACGGCAATCTTGAAACTTTCTGAGAATGGAGAGCTTCAGAGGATACGCGAGAATTGGTTCTGTAAGATGGGTTGTCCTGAAGAAAGGGGAAGCAACTCTGAGCATAAACGGCTTCACTTGAATAGCTTTTGGGGTCTATATCTCTCATGTGGTGTTGTCTCTCTTGCTGCCTTTCTGGTGTTTCTGCTGCGAACAACTTGCCAATACGTCCGCTATAATAAACAAAGGCAAAACGATATTTCTTCATCAGCCCCAGAGCCTTCGGGTAGCCACTGTTCCTATGCCGTATATAGGTTTTTTAACTTCATTGACGAGAAGGAAGAGGCCATCAAGAAAATTTTCACCCAACGTGACAACCCAAACACAAACACAAACACCAGCTGA 2745 0.4157 MEKLLSLPLVIWIWVFFLGGIARCQRPPTINIAAVFTFNSVIGKAAKSAMEMAVSDVNADPRVLNGTKLKLIMEDAGCNVFLGAIGAFRALEKGVAAIIGPQSSSIAQMISQIANGLQVPLISYAATDPTLSSLQFPFFFRTVQSDSVQMSAMADLIDFYGWKEVIAVFLDDDFGRNGISALDDELVKRRLRSAHKLPLSVRFDPDEITHLLNQSKLFGPRVYVLHVNMDPRLRIFTIAHKLQMMASDYVWLATDWLSTTLDSFSPVNKNFPLGILQGVVGFRPHVPDSSQKRAFVSRWMEMQKEGAVTSGLNSYGLYAYDTIWVAALSIDKFIKVHKNISFSSNGDYKQTEESDIQLDKLKVFAGGSDLVNILLQSNFAGVSGQFQFNSDRNIISSGYDVININQMAITRVGYWSRNSGFSVVPPEKLKREEHGSFYQNQKLENITWPGGKKGKPRGWVIADNARPLRIGVPKRASFVEFVTELPSHQIQGYCIDVFKKALEFIPYHVPYVLEPFGDGHSNPNYDALVKMVAANLYDAVVGDVAIVTNRTKFVDFSQPFVTTGLVIVAPIKNAKSSSWVFLKPFTADMWCATAASFIMIGVVIWILEHRVNDDFRGPPKRQIATIFIFSLSTLFKTNKEKTVSTLGRMVMITWLFLLMVITSSYTASLTSILTVEQLSSPITGIDSLIESNWPIGFQVGSFAYSYLKDSLSVPKSRLVPLGSPEAYERALRQGPSGGGVAAIIDELPYVELFLSTQTDFAIIGQPFARSMWGFAFQRQSPLAVDMSTAILKLSENGELQRIRENWFCKMGCPEERGSNSEHKRLHLNSFWGLYLSCGVVSLAAFLVFLLRTTCQYVRYNKQRQNDISSSAPEPSGSHCSYAVYRFFNFIDEKEEAIKKIFTQRDNPNTNTNTS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0622 914 FunFam Glutamate receptor 463 578 - -
Glsi04g0622 914 CDD PBP1_GABAb_receptor_plant 31 425 IPR044440 -
Glsi04g0622 914 SMART GluR_14 467 809 IPR001320 GO:0015276|GO:0016020
Glsi04g0622 914 PIRSF IGluLR_plant 1 914 IPR017103 -
Glsi04g0622 914 FunFam Glutamate receptor 578 716 - -
Glsi04g0622 914 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 866 IPR015683 -
Glsi04g0622 914 CDD GluR_Plant 466 807 - -
Glsi04g0622 914 Gene3D - 773 807 - -
Glsi04g0622 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Glsi04g0622 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Glsi04g0622 914 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Glsi04g0622 914 Pfam Ligand-gated ion channel 808 839 IPR001320 GO:0015276|GO:0016020
Glsi04g0622 914 Gene3D - 145 421 - -
Glsi04g0622 914 SUPERFAMILY Periplasmic binding protein-like I 23 450 IPR028082 -
Glsi04g0622 914 FunFam Glutamate receptor 704 811 - -
Glsi04g0622 914 Pfam Receptor family ligand binding region 47 405 IPR001828 -
Glsi04g0622 914 Gene3D - 48 396 - -
Glsi04g0622 914 Gene3D - 577 706 - -
Glsi04g0622 914 SUPERFAMILY Periplasmic binding protein-like II 447 807 - -
Glsi04g0622 914 Gene3D - 740 772 - -
Glsi04g0622 914 FunFam Glutamate receptor 145 304 - -
Glsi04g0622 914 Pfam Bacterial extracellular solute-binding proteins, family 3 469 807 IPR001638 -
Glsi04g0622 914 Gene3D - 473 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0622 Glsi-ChrGlsi04 4302258 4306136 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0622 24 910 Ion Channels AT2G32400 55.754 0.0 1017