Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0612 ATGCCGAGAATAATCCGCAACGACAACGATGAAGTTGAAGAGGTCGGCGCTAACGCATCGAGAGAAGGTGGCGGTGAGGAGAAACAGAGTATGAAGAAGGGGCCGTGGACCGCGGCAGAAGACGCGATCTTGATAGAGTACGTGAAGAAGTATGGTGAGGGGAACTGGAACTCTGTCCAGAGGAATTCTGGATTGTCAAGGTGCGGCAAAAGTTGCAGACTCAGATGGGCCAACCATTTAAGGCCTAATCTGAAGAAAGGTGCATTTTCTCAAGAAGAAGAGCAGATCATCATCGAGCTTCACGCTAAGCTCGGAAACAAATGGGCTCGAATGGCGTCCCAGTTACCTGGGAGGACAGATAATGAAATAAAGAATTTCTGGAATACTAGAATGAAAAGGCGCCAGAGAGCTGGATTACCTCTTTATCCTCCAGAAGTTCAAGACGAAGCTGCTCTTTACCATCTCCACCAACACCAACAATACTTTGCACCACCCCACCCTTCCTCTTTCTCATTCTCTTCACTTCTATCTTCCTCTAATTATCGCCAGAAGCTTAATGAGCTAAACTATTCTTCTGCCGCAAATCAATCTGATTCTGCTTATGACCAGCAATTCAAATTTTCCAACAAAAACAATGGAAATCTGGGTCTGCCGCTATCCTCTTTTTCTCCATATGGGTCTTCGTCTTCGACTCTGTTAAACCATAGTTTTGCTACTCATTCAGCTGCAGCAGCTGACTCACATGACTACCAGTCTGGAACCTACAAATACGACTTTAATTCCAGTGCTGTGGTTCCAGGCTTGAATACTACAGAGATCTCTTCGAGCCAATCTCCACCAGGATCGGAAACTCCTGCTTCATCCTATACTAGTGGTGTTCATGGCTTGATGGGAGCTTCAAGTATTGCTATGGACTATTATGAAGTTGCACCATTATCCCCTGAAGGAAACAGTGGCCTCTTGGATGCTCTAGTGATGGAGGCTCAAGCCCTTTCTCGCAGTGATAACAAGTCTAAGAGTGAGGATTCAACAGCAGCAGGAAAGTTATCTTTAAAAAGGAAAAGAATGGTGGTTGAGCATTCCACGGAGGAGGAAGACCCTGTGCCAGTTGAGTTAGCTATGAAGAACGGTGGAGACACTACTGCTGAAACCCAGAGGGATGATTTGAGCTCTTCTCAATTATCAACAGGGAAGAAACCGATTGCTGATAAGGATCCATTCATGGAGGAGATGAATTCCATGGACGATGACTTGTTTAGCCTGCTCAACAATTTTCCCTCAGAAATGCCAATGCCTGAGTGGTACCGCAAAGGAGAAAGGCAATCATTGGAAATTGAAAATCGACAAGATGCTTCACCGGGCCCCACTGATCAGGAACTTGCTTGGACTCTCGGAACCTGCTGGAACAACATGCCTAGAATATGCTAG 1428 0.4587 MPRIIRNDNDEVEEVGANASREGGGEEKQSMKKGPWTAAEDAILIEYVKKYGEGNWNSVQRNSGLSRCGKSCRLRWANHLRPNLKKGAFSQEEEQIIIELHAKLGNKWARMASQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVQDEAALYHLHQHQQYFAPPHPSSFSFSSLLSSSNYRQKLNELNYSSAANQSDSAYDQQFKFSNKNNGNLGLPLSSFSPYGSSSSTLLNHSFATHSAAAADSHDYQSGTYKYDFNSSAVVPGLNTTEISSSQSPPGSETPASSYTSGVHGLMGASSIAMDYYEVAPLSPEGNSGLLDALVMEAQALSRSDNKSKSEDSTAAGKLSLKRKRMVVEHSTEEEDPVPVELAMKNGGDTTAETQRDDLSSSQLSTGKKPIADKDPFMEEMNSMDDDLFSLLNNFPSEMPMPEWYRKGERQSLEIENRQDASPGPTDQELAWTLGTCWNNMPRIC 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0612 475 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 452 - -
Glsi04g0612 475 MobiDBLite consensus disorder prediction 270 291 - -
Glsi04g0612 475 MobiDBLite consensus disorder prediction 331 404 - -
Glsi04g0612 475 FunFam MYB-related transcription factor 32 85 - -
Glsi04g0612 475 FunFam Transcription factor MYB97 88 163 - -
Glsi04g0612 475 SUPERFAMILY Homeodomain-like 30 127 IPR009057 -
Glsi04g0612 475 ProSiteProfiles Myb-like domain profile. 28 80 IPR001005 -
Glsi04g0612 475 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Glsi04g0612 475 Gene3D - 32 85 - -
Glsi04g0612 475 MobiDBLite consensus disorder prediction 1 29 - -
Glsi04g0612 475 MobiDBLite consensus disorder prediction 378 398 - -
Glsi04g0612 475 CDD SANT 35 80 IPR001005 -
Glsi04g0612 475 CDD SANT 88 129 IPR001005 -
Glsi04g0612 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 80 IPR017930 -
Glsi04g0612 475 Pfam Myb-like DNA-binding domain 36 95 - -
Glsi04g0612 475 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Glsi04g0612 475 Gene3D - 88 134 - -
Glsi04g0612 475 MobiDBLite consensus disorder prediction 334 370 - -
Glsi04g0612 475 SMART sant 32 82 IPR001005 -
Glsi04g0612 475 SMART sant 85 133 IPR001005 -
Glsi04g0612 475 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0612 Glsi-ChrGlsi04 4223364 4225608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0612 29 475 MYB Transcription Factor Family AT2G32460 38.388 3.63e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0612 Myb_DNA-bind_6 4.2e-15 CL0123