Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0607 ATGGGGTTGATAAAGGCAGCCATAGGAGATGCGATTTTAACATCAATATGGGTTTTCAGTGCGTCAACGCTGAGGATTTTCACTGCCGAAGTGGCTGCTCTTGTCGGAACTCAGCCTGCTTCACTTGCAGGCCTCTTCATCACCACCCTCATCGCTACCTTCCTTGTCTTCACAATCAGCTTGATTGGCAGAGTCTTGGGTGGTGCTAGTTTCAACCCTTCGACCACAGTCACCTTCTACACCGCAGGGCTCAGAACTGACTCCTCTCTTGCATCCATGGCTGTTAGATTCCCTGCGCAGGCAGCAGGTGGGGCTGCCGGTGCGTGGGCAATTGTGCATGTGATCCCAACCCAGTATAAAACCATGCTTAAAGGTCCTTCCTTGAGGGTGGACTTGCATACTGGTGCTATAGCAGAAGGGGCGTTGACTTTTGCTCTTAACTTAGCTATCCTAATTATTTTGCTCAGGGGTCCTAAGAACCCTCTTCTGAAAGTGTATTTGCTTTCTGCGGCAACGGTGGCTTTGGTTGTTCCTGGTTCTGGGTACACAGGGCCTTCTATGAACCCAGCCAATGCCTTTGGATGGGCTTACATGAACAATAGGCACAACACTTGGGAGCAATTCTATGTGTATTGGATATGTCCTTTCATTGGGGCAATATTAGCGGCTAATGTCTACAGGTTTCTCTTTATCTCACCAGTCAAGCAGAAGAAAGCTTGA 720 0.4875 MGLIKAAIGDAILTSIWVFSASTLRIFTAEVAALVGTQPASLAGLFITTLIATFLVFTISLIGRVLGGASFNPSTTVTFYTAGLRTDSSLASMAVRFPAQAAGGAAGAWAIVHVIPTQYKTMLKGPSLRVDLHTGAIAEGALTFALNLAILIILLRGPKNPLLKVYLLSAATVALVVPGSGYTGPSMNPANAFGWAYMNNRHNTWEQFYVYWICPFIGAILAANVYRFLFISPVKQKKA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0607 239 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0607 239 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0607 239 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0607 239 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0607 239 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0607 239 PANTHER AQUAPORIN SIP1-1 1 238 IPR044222 GO:0015250
Glsi04g0607 239 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0607 239 Gene3D Glycerol uptake facilitator protein. 1 238 IPR023271 -
Glsi04g0607 239 SUPERFAMILY Aquaporin-like 3 233 IPR023271 -
Glsi04g0607 239 FunFam Aquaporin SIP1-1 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0607 Glsi-ChrGlsi04 4194946 4195665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0607 1 239 Major Intrinsic Protein MIP AT5G18290 47.951 8.27e-65 200