Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0605 ATGTCCCGTAGAAGTGACCAAAAAAAAAGAAAGGTTATTACTGATTGTACTATCAACTACCTGAGTTACTAGTCAATGGAGCTTCGTTCTCGTAGACGCCTTTCTAGTCCTAAAGGAAAGGAACAACAGCCGAGGGATGCCTCTGGGGAAGCTAAAACTAATAGCCACTGCAGCAAAAATACGGATCAAGTTTCATCTTCGGGTTCAGAATTCAACTATGAAGATGAAGCTGTGAGTGGAAACTTTCTTTTTGACTTAAATGAAGAACCAACTTCTAGTTTTTGTGTTTCTGATGGAGAAGATAACACTTCTGATTCATCTGATGGGCACAAGCCTTTATCTAGAAAGAGAAGGAAAAAATATAGCTCAAGAAATGGAGAGCCCCATCAGGAAGTGGAAGTGGTGGAGCATGGGGATAGTGAGGGATTCCCAATGGTTCAGCAGCAACCAGTTGACCATAATTCGGTTGGGTCAAAAAAGAAGAGAAATGCAAGAAAGAAAAATGAAGATTCTCGGCCATTGCTGTTGTGGAATGTGTGGGAAGAGCAGCATGAGAGATGGATTGATGAGAATTTTTTGGAAGATGTTGACTTGGACAGTCAGAGTGAACTAATGAATGAAACTGCTGAGGCATCTTCTGAACTTACTATGCCTTTGCTAAGATATCAAAAGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGCAATTAGAGGGGGTATTCTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCCCTTGTCCTTGCCAAACGTGAATTCAATCAAATGGTATGTGAGCCAGACGAACCCTCAACTTCATCAGGTTCATCTACAATCTTGCCTGCAATCAAAGGAACACTTGTAATATGTCCTGTGGTTGCCGTCACTCAGTGGGTTAGTGAGATTGATCGGTTTACTTTAAAAGGAAGCACAAAGGTGCTGATTTATCATGGAGCTAGGAGAGGGAAGAATGGCGAACAGTTCTCAGAATATGATTTTGTAATAACTACGTACTCTATTGTTGAGTCTGAGTACAGGAAGTATATGATGCCTCCTAAGGAGAAATGCCATTATTGTGGCAAATTATTTAACCACAATAAGTTATATATTCACCAGAAGTATTTTTGTGGGCCTGATGCTCAGAGAACAGAAAAACAATCAAAGCAATTCAAGAAAAAGAAAAGAGAAGCTAAGAAGCAGAAGATCAAGGAATATGAGAGTGGCGAAGATAAGGGAGATCACACGAAGATGCAAAGGTGTTGGAGTGAAGAATTGGAAAAGGGTTTTAACAGAATGAAAGAAAAGGAAATGGGCATGAGAATAGACAATTCAGATGCCATATGCAGGGATAAGTCACTTCTTCATGCTGTAAAGTGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGGCATTGTAACACCGCAAAAGCAGTCCTTGCTCTGAAGTCTTCCTATAGATGGGCATTAAGTGGTACTCCCCTACAGAATCGTGTGGGAGAGCTGTATTCTCTGGTACGATTCCTGCAAATAATACCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGACTCTTGATCATAGATGCTATTATGCAGTGCCTCTAAACAATGTTCAAACTGCCTCCACAGTTCTGTCAGACATTTCTGTTGGTGGAACAAAGGCTGCTGATCTCGCACTTCCACCTAGAATTGTTTCATTACGGAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAAAGTCAGGCACAGTTTAATACATATATCGAATCAAATACTCTGATGAACAATTATGCTCATATATTTGACCTTCTCACACGGCTGCGGCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAACTGCAGCATCAAGAGGTGGAATCGCAGTTAGCAATGGCAATGTTGAACAAGAATGTGGCCTTTGTCATGACCCAGTAGAAGATCCTGTGGTTACTTCATGTGAGCACATATTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGACGAGTATCATGCCCCTCATGCTCTAAATTACTTACAATTGATTTAACTTCAAACAAGGATGCTGTGGCTCAGTCTAATAAAACAACAATTAAGGGTTTCAGATCCTCAAGCATTTTAAACAGAATTCGACTTGAGAACTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAAATTAGATTTATGGTAGAAAGGGATGGTTCTGCTAAAGGGATTGTTTTTAGCCAGTTCACATCATTCTTGGATCTCATAAACTACTCCTTGCACAAGTCTGGTGTATCTTGCGTTCAATTAAATGGAAGCATGTCATTGGCTGCCCGGGATGCTGCCATTAAGAGATTTACTGATGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGAGGCGTTGCTCTCAATTTGACAGTAGCATCACATTACATGGCAAATTTTGTTCAGCTTCGTTTGTCATGGGAGAATTTGTTCGCCTGCATTATTTTAGTGGAGCTACATCATGTTTCCTTAACCGCCGATTCATCTGTTGGGCATTTTCAGGTTTTCCTAATGGACCCATGGTGGAACCCAGCTGTAGAGCGACAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCGATCAGAATCGTGAGGTTTGTCATTGAGAACACGATTGAGGAGAGGATTTTGCAGCTGCAAGAGAAGAAGGAATTAGTATTTGAAGGGACTATAGGTGGCTCTTCCGATGCTCTTGGGAAATTGACAGAAGCAGACATGAAATTTCTATTTGTTACCTGA 2850 0.4081 MSRRSDQKKRKVITDCTINYLSYXSMELRSRRRLSSPKGKEQQPRDASGEAKTNSHCSKNTDQVSSSGSEFNYEDEAVSGNFLFDLNEEPTSSFCVSDGEDNTSDSSDGHKPLSRKRRKKYSSRNGEPHQEVEVVEHGDSEGFPMVQQQPVDHNSVGSKKKRNARKKNEDSRPLLLWNVWEEQHERWIDENFLEDVDLDSQSELMNETAEASSELTMPLLRYQKEWLAWALKQENSAIRGGILADEMGMGKTIQAIALVLAKREFNQMVCEPDEPSTSSGSSTILPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLIYHGARRGKNGEQFSEYDFVITTYSIVESEYRKYMMPPKEKCHYCGKLFNHNKLYIHQKYFCGPDAQRTEKQSKQFKKKKREAKKQKIKEYESGEDKGDHTKMQRCWSEELEKGFNRMKEKEMGMRIDNSDAICRDKSLLHAVKWQRIILDEAHYIKSRHCNTAKAVLALKSSYRWALSGTPLQNRVGELYSLVRFLQIIPYSYYLCKDCDCRTLDHRCYYAVPLNNVQTASTVLSDISVGGTKAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYIESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTAASRGGIAVSNGNVEQECGLCHDPVEDPVVTSCEHIFCKACLIDFSASLGRVSCPSCSKLLTIDLTSNKDAVAQSNKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHYMANFVQLRLSWENLFACIILVELHHVSLTADSSVGHFQVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILQLQEKKELVFEGTIGGSSDALGKLTEADMKFLFVT 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0605 949 SMART ultradead3 215 537 IPR014001 -
Glsi04g0605 949 Pfam Helicase conserved C-terminal domain 740 830 IPR001650 -
Glsi04g0605 949 Pfam SNF2-related domain 233 633 IPR000330 GO:0005524|GO:0140658
Glsi04g0605 949 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 519 IPR014001 -
Glsi04g0605 949 Gene3D - 221 364 IPR038718 -
Glsi04g0605 949 MobiDBLite consensus disorder prediction 93 167 - -
Glsi04g0605 949 MobiDBLite consensus disorder prediction 48 72 - -
Glsi04g0605 949 MobiDBLite consensus disorder prediction 31 47 - -
Glsi04g0605 949 CDD DEXDc_SHPRH-like 219 531 - -
Glsi04g0605 949 Pfam Zinc finger, C3HC4 type (RING finger) 656 695 IPR018957 GO:0046872
Glsi04g0605 949 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 50 947 - -
Glsi04g0605 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 947 IPR027417 -
Glsi04g0605 949 SUPERFAMILY RING/U-box 653 700 - -
Glsi04g0605 949 CDD SF2_C_SNF 738 904 - -
Glsi04g0605 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 521 IPR027417 -
Glsi04g0605 949 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 736 939 IPR001650 -
Glsi04g0605 949 ProSiteProfiles Zinc finger RING-type profile. 656 696 IPR001841 -
Glsi04g0605 949 ProSitePatterns Zinc finger RING-type signature. 671 680 IPR017907 -
Glsi04g0605 949 MobiDBLite consensus disorder prediction 124 138 - -
Glsi04g0605 949 Gene3D - 386 536 IPR038718 -
Glsi04g0605 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 720 IPR013083 -
Glsi04g0605 949 Coils Coil 385 405 - -
Glsi04g0605 949 MobiDBLite consensus disorder prediction 391 416 - -
Glsi04g0605 949 Gene3D - 570 947 IPR027417 -
Glsi04g0605 949 SMART ring_2 656 695 IPR001841 -
Glsi04g0605 949 MobiDBLite consensus disorder prediction 27 72 - -
Glsi04g0605 949 SMART helicmild6 771 893 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0605 Glsi-ChrGlsi04 4177000 4186401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0605 159 949 RAD5 or RAD16-like Gene Family AT1G05120 59.758 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi04g0605 SNF2_N 5.6e-52 CL0023