Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0602 ATGAATTTAAATATCTGTTTTGTTAAGGGAGATGTTGATCCGATAGCTCGATTTGGTGGCTTTGGCTTGTATTTCACACCACCAAACACCTTTTTTGAAGTAGAACCTCCCCACGTGCCGCTTACCAAGCCATTGCCGACTAGGTTGGCTTATGCCGCCAAAGGCCACCCAAATTTCGACACGTTGTGGACTTCCGTTGAAGGAATTGTCAGCTCTAGAGAGAGAAGAGAGCCAACCCTGCAACCTACCAATAAAATGAACCTTTTTAAACCATCCTCCTTCAATGTGTCTCTGTTTATATATATATATAAAGCCAGCCACTCTGAACTTAGCACCGCACGCAGCCTTCTCTTTCACAACATGGACTGGCGTAGAGGCCACATCTTAGGCCATGGCTCCTCCGCCACCGTCTCCCTCGCCACCTCTACCCATTCCGGTGACTTCTTCGCCGTCAAATCGGCCGAGTTCTCTCGCTCAGAGATGTTACGGAGAGAGCAGACGCTCCTATCTTCTTTGTGCTCTCCTTATATAGTTAGTTATAAGGGGTTTGATATTACTAGAGAGAAAAACAAGCTCTTTTACAATCTTTTCATGGAGTATTTCCCCTTTGGGACGCTTCTTCAAGCCGTTCACCGGCACGGTGGCCGGCTTCAGGAGTCAGTGGTCGCATGCTACACAAAGCAGATTCTGCAGGGGTTAAAGTATTTACATTCAAATGGGTTGGTACATTGTGACATCAAGGGCACCAATATCTTGATCGGTGAAGATGGCGCCAAAATTTCTGACTTCGGATGTGCTAAGCGGGTGATTCAGCCCGCCGCGCCGATCAGTGGCACGCCGATGTTTATGGCACCAGAGGTGGCGCGTGGGGAGGAACAGGAGTACCCTTGTGATATTTGGGCACTTGGATGCACCGTGATTGAAATGGCTACAGGGGTCTCACCCTGGCCTAATGTGGCAGACCCATTTTCAGTTCTTCACCGGATTGCATATTCCGACCAGTTACCTGAGATTCCAGGTTTTCTATCAGAGGAAGGAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCAAAAGAGAGATGGACGGCTTCTCAACTGCTGAATCATCCATTCCTTGAGGAATTCAACTTCAAGTCTAAGCAAATTCAAGAATCCAATTCAAGTTCACCGACAAGCATTCTCGAGCAGGGGTTTTGGAATTCTGTGGAAGAATCGGAAAGTCATGGCAATTCGATTCGTACAAGTTTTGAAAATTCGGCCGCTGATAGGATCAGAAGCTTAGCTGCGTTTTCAGGGGAACCCAGTTGGGAAAGGGATGACGGGGATTGGATCACAACCAGAGGGAATGAAGATGAAGTTGACGGTGCCAGCATTAGTGGGTCAGAGACAACTTCAACTCGTGATGGTTTGGAAGAGTTGGTGAAAAGCAATGTTAGCGGTAGAATTAGTGGGTATTTTTGTGAGCGTGAGGATTACAAATGTAGGAAAATTAGCGATATTCTCAATTTTGAGAGAGGCATTGATGAGATGCTACTACCTTCAATGTCAGTTTTTTCATAA 1563 0.4651 MNLNICFVKGDVDPIARFGGFGLYFTPPNTFFEVEPPHVPLTKPLPTRLAYAAKGHPNFDTLWTSVEGIVSSRERREPTLQPTNKMNLFKPSSFNVSLFIYIYKASHSELSTARSLLFHNMDWRRGHILGHGSSATVSLATSTHSGDFFAVKSAEFSRSEMLRREQTLLSSLCSPYIVSYKGFDITREKNKLFYNLFMEYFPFGTLLQAVHRHGGRLQESVVACYTKQILQGLKYLHSNGLVHCDIKGTNILIGEDGAKISDFGCAKRVIQPAAPISGTPMFMAPEVARGEEQEYPCDIWALGCTVIEMATGVSPWPNVADPFSVLHRIAYSDQLPEIPGFLSEEGKDFLGKCLRRNPKERWTASQLLNHPFLEEFNFKSKQIQESNSSSPTSILEQGFWNSVEESESHGNSIRTSFENSAADRIRSLAAFSGEPSWERDDGDWITTRGNEDEVDGASISGSETTSTRDGLEELVKSNVSGRISGYFCEREDYKCRKISDILNFERGIDEMLLPSMSVFS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0602 520 CDD STKc_MAPKKK 122 373 - -
Glsi04g0602 520 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Glsi04g0602 520 Gene3D Transferase(Phosphotransferase) domain 1 119 434 - -
Glsi04g0602 520 Pfam Protein kinase domain 125 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0602 520 SUPERFAMILY Protein kinase-like (PK-like) 118 401 IPR011009 -
Glsi04g0602 520 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 103 415 - -
Glsi04g0602 520 ProSiteProfiles Protein kinase domain profile. 123 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0602 520 FunFam Mitogen-activated protein kinase kinase kinase 17 122 424 - -
Glsi04g0602 520 MobiDBLite consensus disorder prediction 434 469 - -
Glsi04g0602 520 SMART serkin_6 123 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0602 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Glsi04g0602 520 MobiDBLite consensus disorder prediction 436 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0602 Glsi-ChrGlsi04 4156609 4161813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0602 115 474 MAP Kinase Kinase Kinase AT5G55090 49.081 3.44e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Glsi04g0602 Pkinase 2.9e-54 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1474 14 15224699 15225904 Glsi04g0602 04 4156609 4161813 CCT
Glsi04g0602 04 4156609 4161813 Glsi04g0602 04 4156609 4161813 ECH