Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0600 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAGTTGGTAGCTTCTCCCTCCACAACCCAGTTGTCCTCAATTCTTTTCCTGAAGACACCCATCCGCCCAAGTACAAGCGTGGTCCCATGGATGCCACTCTTACCACAACCACCACCACCACCACCACCATGTCTCCACCCGCTTCTATCCCATTCCAAGTCAACCTTAACTGTCACGACAAAAGAATCGTCATCGATGAAATGGACTTCTTCTCTAAGGATGACAAGGTTGCTTCCTCTTCTGCCGATGCTGATGAACAGGAATTAGAATTCAAAGTAAACACTGGTCTCAATCTTTTAACTACCAACTCTAGCAGCGACCAATCCATGGTGGACGATGGCTTAGCAATATCACCTAATTTTGAAGATAAAAGAGCTAAGAGTGAGCTGGCTGCTCTTCAGGCTGAGGTCGACAGAATGAAATTGGAGAATCATCGGTTGAAGGACATGCTTGATCAGGTTAATAACGGGTATAATGCCCTGCATATGCATATGGTGAATTTGATGCAGAACCAGAAAGGTGAGGACGCTGAAAAAAACCAAGTGTTTGATGGAAAAGTAGAAGAAAGGAAACAATCTGGGAATAACGGAGCGTTAGTGCCAAGACAATTTATTGATCTTGGGTTGGCTAATAATGCTGAGCCTCATACCGATGAGCCTTCTCTTTCTTCATCAGTGGGAAGAAGTCAGGAGCAGTCAAGATCACCGGAAGTGGCTTCCAAGGAATTTGGCGTAAAAAAGAATGGGATTAATGAAGGACTTGGGTTTGATCAAGATAAGAATGAATTTGGTAGTGGAACTAAAATTGGAGATAGCCCTCCAGATCAAGCTTTTGAAGCTGATAAGATTCCAAAATTCAGTTCGGCAAAGAACGTTGACCAAGTGGAGGCCACCATGAGGAAGGCAAGAGTTTCGGTCAGAGCTCGGTCAGAGGCACCCATGATCACTGACGGATGCCAATGGCGAAAATATGGGCAGAAAATGGCCAAAGGAAACCCGTGCCCTCGAGCTTATTATCGTTGTACCATGGCTGCAGGTTGCCCAGTTAGAAAACAGGTTCAAAGGTGTGCTGAGGATCGAACAATCTTAATAACAACATATGAAGGCAATCACAGCCACGCCTTGCCTCCAGCGGCGATGGCAATGGTACAAACAACATCATCAGCTGCAAAAATGTTGCTATCAGGATCAATGTCAAGCAGTGAAGGGCTAATGAATGCAAGTTTCCTCACAAGGACAATGCTCCCATGCTCTTCAAACATGGCTACTATATCAGCCTCAGCTCCATTCCCAACTGTTACATTGGACTTAACTCACTCTCCAAATCCTTTACAGCTCCCAACCCCACCTTCAGGCCAATTTCAAATCCCCTTCCCAGCTTCCCCAGCCTCATTGCTACCTCAAATTGTGGGTCAGGCTCTGTATAACCAGTCAAAGTTTTCTGGGCTTCAAATGTCCCAGGATATAGCAGAACCTTCACAATTGGGTACCACATCGCAGCAACCACCACCTCCACCACACTTGGCTGACACAGTTGGTGCTGCCATTGCAGCAGACCCGAACTTCACTGCAGCTCTAGCAGCAGCCATCACTTCCATTATGGGCGTTGCTCTACCAGACAACAATATTAACAATAATGGCAATGCTATTGATCCAACTAGCAATAACAATAGCAGCGGAAGCAATAAAATCAGCAATTCCAATTTCTCAAGGAACTAG 1755 0.4575 MARGGGLSIDSDPVGSFSLHNPVVLNSFPEDTHPPKYKRGPMDATLTTTTTTTTTMSPPASIPFQVNLNCHDKRIVIDEMDFFSKDDKVASSSADADEQELEFKVNTGLNLLTTNSSSDQSMVDDGLAISPNFEDKRAKSELAALQAEVDRMKLENHRLKDMLDQVNNGYNALHMHMVNLMQNQKGEDAEKNQVFDGKVEERKQSGNNGALVPRQFIDLGLANNAEPHTDEPSLSSSVGRSQEQSRSPEVASKEFGVKKNGINEGLGFDQDKNEFGSGTKIGDSPPDQAFEADKIPKFSSAKNVDQVEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHSHALPPAAMAMVQTTSSAAKMLLSGSMSSSEGLMNASFLTRTMLPCSSNMATISASAPFPTVTLDLTHSPNPLQLPTPPSGQFQIPFPASPASLLPQIVGQALYNQSKFSGLQMSQDIAEPSQLGTTSQQPPPPPHLADTVGAAIAADPNFTAALAAAITSIMGVALPDNNINNNGNAIDPTSNNNSSGSNKISNSNFSRN 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0600 584 CDD bZIP 136 165 - -
Glsi04g0600 584 SMART WRKY_cls 327 387 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi04g0600 584 Gene3D WRKY domain 312 389 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi04g0600 584 MobiDBLite consensus disorder prediction 228 249 - -
Glsi04g0600 584 MobiDBLite consensus disorder prediction 224 288 - -
Glsi04g0600 584 SUPERFAMILY WRKY DNA-binding domain 320 388 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi04g0600 584 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 105 564 IPR044810 GO:0003700
Glsi04g0600 584 FunFam probable WRKY transcription factor 31 312 389 - -
Glsi04g0600 584 MobiDBLite consensus disorder prediction 560 584 - -
Glsi04g0600 584 ProSiteProfiles WRKY domain profile. 322 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi04g0600 584 Pfam WRKY DNA -binding domain 329 385 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi04g0600 584 Coils Coil 135 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0600 Glsi-ChrGlsi04 4148230 4150338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0600 74 546 WRKY Transcription Factor Family AT1G62300 50.898 2.75e-127 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi04g0600 WRKY 1.2e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1475 14 15232819 15235099 Glsi04g0600 04 4148230 4150338 CCT
Glsi04g0600 04 4148230 4150338 Glsi04g0600 04 4148230 4150338 ECH