Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0582 ATGGAGGGTCCAGTGATGGAAGAGAATAAGACCTCTGAGGCGCATTTGACTTCAGCAGCCGCATTTGTGGAGGGTGGAATCCAGGACGCTTGTGATGATGCTTGCAGCATATGTCTTGAAGCCTTCTGTGATAGTGATCCTTCAACGGTGACAAGTTGCAAACACGAGTTTCATCTTCAATGCATTCTGGAATGGTGTCAAAGAAGCTCCCAGTGTCCCATGTGCTGGCAACTCATCAGTCTTAAAGATTCAACCAGCCAGGAATTGCTTGAGGCAGTGGAAAAAGAGAGAAATTTTAGGTTCAATCCATCTAGAAATGCTGCGATATTTCATCATCCAACTCTTGGGGATTTTGAGTTGCAACATTTGCCAGTTGGTGCTAATGATGCTGATCTTGAAGAGCGTATAATCCAACACTTGGCTGCTGCTGCTGCAATGGGGCGAGCACGTCACATTGCTAGAAGGGAAGGCCAAAGAAACAGGTCATCAGCTCAAGGTCACCCGCACTTCTTGGTATTTTCAACTCAGTCTAATTCACCTCCCATGGCTCCAGCTTCTTCCTCTCCAACTCAGAGGGAAAATGGTGAACCGACTTCTGCAATCACTGTTTCCAGTCTATCTCCAACTCATGCAACTGGAGAAGTATCATCACAGCTGACTTCAGTTCCTCCTGTTCAAGCTGACCAGGTTTCTGCTGCAGGATCTGGACCTACTGGTCTTGCTGCTGATCACCAGGGAATGTCTAACAGCAATAGGAGGTCTAGTCAGTTGTCCCCAACATCTAGTAGTCAAGACAGAGCTGGGCCATCGGAATTCCAATCATTTTCAGAATCTCTGAAGTCTAGGCTAAATGCAGTGTCAATGAGATACAAAGAATCAATTTCCAAGAGCACTAGAGGTTGGAAGGAGAGATGGTTCTCTCGCAACACCTCCTCTATGTCTGATCTGGGATCCGAAGTAAGACGAGAGGTCAATGCAGGAATTGCCACTGTGTCGCGCATGATGGAGCGTCTAGAAACTGGAGACAGTGATAGAACTAGTAGCAATTCTGCGCCAACTAATTTAGAAGATGCTTCTGTTTCAGAATCAAATGACCAGCATTTAACTGACACTGGAGGTGTCAATCTTTTGAGGGAGAAAAATTCAGAAACATCTTGCACTGCTGGTTCTAGTTCAAATTAA 1182 0.4569 MEGPVMEENKTSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQLISLKDSTSQELLEAVEKERNFRFNPSRNAAIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGHPHFLVFSTQSNSPPMAPASSSPTQRENGEPTSAITVSSLSPTHATGEVSSQLTSVPPVQADQVSAAGSGPTGLAADHQGMSNSNRRSSQLSPTSSSQDRAGPSEFQSFSESLKSRLNAVSMRYKESISKSTRGWKERWFSRNTSSMSDLGSEVRREVNAGIATVSRMMERLETGDSDRTSSNSAPTNLEDASVSESNDQHLTDTGGVNLLREKNSETSCTAGSSSN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0582 393 MobiDBLite consensus disorder prediction 344 393 - -
Glsi04g0582 393 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Glsi04g0582 393 FunFam E3 ubiquitin-protein ligase RHF2A 6 109 - -
Glsi04g0582 393 SUPERFAMILY RING/U-box 28 82 - -
Glsi04g0582 393 MobiDBLite consensus disorder prediction 171 275 - -
Glsi04g0582 393 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 15 83 - -
Glsi04g0582 393 Pfam Ring finger domain 34 75 IPR001841 -
Glsi04g0582 393 SMART ring_2 35 75 IPR001841 -
Glsi04g0582 393 MobiDBLite consensus disorder prediction 336 393 - -
Glsi04g0582 393 MobiDBLite consensus disorder prediction 171 233 - -
Glsi04g0582 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
Glsi04g0582 393 MobiDBLite consensus disorder prediction 242 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0582 Glsi-ChrGlsi04 3981470 3985063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0582 32 84 C3H Transcription Factor Family AT5G15790 41.509 1.54e-11 62.0