Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g0578 | ATGTCGGATATACGGAAGTGGTTTATGAAATCCCATGACAAGAACAATGCCCCTGAGTCTAAGTCTACGAATCAGGCGAAGGCCTCTCTAGCTAAACAACAGCCGGAAAAACCAGTAGTCGGAGGCCAAGAAAGCTCTGGGAGGAGGAAAACTAGTAAATATTTTACCAATGACAAAAACAAGCCAAAAGATGAAAAGGAAACGCAGGAGCTTCCTGCTAAAAGAAAGAATCCAAAGGACAGTGAGGAATTGCGGAAGCCCCCTCCTAAAAAAATTCATGTAGATGATGGAGATGATGACTCTGCCTTGATCACATCTACAAAGAAGTCAGCTGATACCACTCCAATAAAAAAATTGAAGAGTGGGTCTGGTAGGGGAATTCCTCGGAAGTCTCCAGAAATGGAAGAAAGTGATGAAGATGATGACAAAGATGCTGTGTCACCCCTTAAATCTGGTGGAAGGGGTCGTGGTGGCAGAGGAGCATCAGCACAATCATCTGGTGGGCGGGGTAGAGGGAGCGGAAGGGGTGGATTTATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAATTGTTTGGCTGGTTTGACTTTTGTAATCAGTGGAACACTGGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTACCTTTTATGTGATGAAGATATTGGGGGTCGAAAATCTGCAAAAGCCAAAGAGCTGGGTACTGCCTTCCTCACAGAGGATGGGTTGTTTAACAGGATCCGTTCATCAAAACCTGCAAAAGATCCTGCACAAGAAGAATCTAAGAAATCGGTGAAGAAGGTTGTTGCAACCCAGTCAAAAGGTCCTCAGAAAGCTGAAGCCAACGTCTCCCAATCATCTGGCTCAGCTTCTACCCTATTCAAGCCTAAGACAGAACATTCTGTACAGTCTTCTTTCATATGGACAGAGAAGTATCGACCTAAGGTTCCAAATGACATCATAGGGAATCAGTCACTTGTTAAGCAACTTCACGATTGGTTGGCTCGTTGGAATGAGCAATTTCTTGACAGTAGTAATAAAAAAAAGGGGAAAAAACAAAACGACCCTGGTTCCAAAAAAGCTGTCTTATTAAGTGGAACCCCTGGCATAGGAAAAACCACTTCAGCAAAGTTGGTTAGTCAGATGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGACAGCCGTGGTAAGGCTGATAGCAAAATTGTGAAAGGAATTGGAGGAAGCAATGCAAACTCTATTAAGGAACTTGTCACCAATGAGGCCCTTGGTGCTAGTATGGATAGGGCAAAGCATTCCAAAACTGTGCTTATTATGGATGAGGTTGATGGCATGTCAGCTGGTGATAGGGGTGGTGTCGCTGATCTTATTGCTAGCATCAAAATTTCAAAAATTCCTATTATATGCATTTGCAATGACCGTTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTTAGCTTTCGTAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGCAAGTTGCAAAAGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAATCAGTTACACTATATGAGCATCTCCATGTCAGTTATTAACTATGACGACATTAGGCAGCGCCTTCTATCTAGCTCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTAAAAATGGATGAGAAGATTAACCTCAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCAAGCTTGGCTAGTAAAGATGACAATGATATGAAGCGCATGAACTTAATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAATGAATGTTCAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTTCTCTTGCATCGAGTATATATCCTGCTTCATTGTTGCATGGCCAAAGAGAAATACTTGAGCAGGGAGAACGGAATTATAATCGGTTTGGTGGGTGGCTGGGGAAAAACTCAACAATGGGCAAAAACTTGAGGCTTTTAGAAGATCTGCATGTTCACATGCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGAAACCATTCGTTTGGAATATCTTACACTACTACTTAAACATTTGACAGAACCACTGCGAGTCTTGCCTAAGGATGAAGCTGTTCAGAAAGTCGTGGAATTTATGAATATATACTCAATCAGTCAGGAGGATTATGATACTATTTTAGAGTTATCAAAATTCAAGGGTCATCCAAATCCACTTGAAGGAGTACAGCCTGCTGTTAAATCAGCACTGACAAAAGCATACAAAGAAAAAAGCAAATCTCAGATGGTTCGAGCTGCAGATCTAGTCACTCTTCCTGGAATGAAAAAGGTCCCTAAGAAGCGAATTGCTGCTATTCTAGAACCAGCTGATGAAGGACTGGAACAAGGGGAAGGTGACACCTTGGAAGAGAGTGAAGAGGAGAACTCCTCAGACACAGAGGAGTTGGGTACAACCACTGGTGAGAAGCTGCAGTCAGAACTTAAAACCATGCAAGTACAATTGGATTTGAAGGGAACAGGAAATTCAAGGGCCAAGAAGACACCAGCTGGAAGAGGTAAAGGGGCCTCTGCATCCGCAGAGAAAGGTGGGCAAGCTTCAAGAGCTGGTGCAAAAAGAAAGAGGTGA | 2835 | 0.4272 | MSDIRKWFMKSHDKNNAPESKSTNQAKASLAKQQPEKPVVGGQESSGRRKTSKYFTNDKNKPKDEKETQELPAKRKNPKDSEELRKPPPKKIHVDDGDDDSALITSTKKSADTTPIKKLKSGSGRGIPRKSPEMEESDEDDDKDAVSPLKSGGRGRGGRGASAQSSGGRGRGSGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSAKAKELGTAFLTEDGLFNRIRSSKPAKDPAQEESKKSVKKVVATQSKGPQKAEANVSQSSGSASTLFKPKTEHSVQSSFIWTEKYRPKVPNDIIGNQSLVKQLHDWLARWNEQFLDSSNKKKGKKQNDPGSKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDSRGKADSKIVKGIGGSNANSIKELVTNEALGASMDRAKHSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSISMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFNAGKLKMDEKINLSMSDPDLVPLLIQENYINYRPSLASKDDNDMKRMNLIARAAESIADGDIMNVQIRRYRQWQLSQASSLASSIYPASLLHGQREILEQGERNYNRFGGWLGKNSTMGKNLRLLEDLHVHMLASRESSSGRETIRLEYLTLLLKHLTEPLRVLPKDEAVQKVVEFMNIYSISQEDYDTILELSKFKGHPNPLEGVQPAVKSALTKAYKEKSKSQMVRAADLVTLPGMKKVPKKRIAAILEPADEGLEQGEGDTLEESEEENSSDTEELGTTTGEKLQSELKTMQVQLDLKGTGNSRAKKTPAGRGKGASASAEKGGQASRAGAKRKR | 944 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0578 | 944 | Gene3D | - | 595 | 704 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 883 | 910 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 372 | 394 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 182 | 196 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 280 | 295 | - | - | |
| Glsi04g0578 | 944 | FunFam | Replication factor C subunit 1 | 523 | 594 | - | - | |
| Glsi04g0578 | 944 | Gene3D | - | 523 | 593 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 51 | 105 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 1 | 201 | - | - | |
| Glsi04g0578 | 944 | Pfam | ATPase family associated with various cellular activities (AAA) | 390 | 489 | IPR003959 | GO:0005524|GO:0016887 | |
| Glsi04g0578 | 944 | Pfam | BRCA1 C Terminus (BRCT) domain | 200 | 273 | IPR001357 | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 862 | 882 | - | - | |
| Glsi04g0578 | 944 | Gene3D | BRCT domain | 175 | 277 | IPR036420 | - | |
| Glsi04g0578 | 944 | Pfam | Replication factor RFC1 C terminal domain | 663 | 825 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Glsi04g0578 | 944 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 334 | 583 | IPR027417 | - | |
| Glsi04g0578 | 944 | ProSiteProfiles | BRCT domain profile. | 198 | 279 | IPR001357 | - | |
| Glsi04g0578 | 944 | Gene3D | - | 334 | 522 | IPR027417 | - | |
| Glsi04g0578 | 944 | FunFam | Replication factor C subunit 1 | 334 | 522 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Glsi04g0578 | 944 | SUPERFAMILY | BRCT domain | 198 | 278 | IPR036420 | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 296 | 324 | - | - | |
| Glsi04g0578 | 944 | CDD | HLD_clamp_RFC | 523 | 581 | - | - | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 276 | 324 | - | - | |
| Glsi04g0578 | 944 | CDD | BRCT_RFC1 | 198 | 276 | - | - | |
| Glsi04g0578 | 944 | CDD | AAA | 385 | 486 | - | - | |
| Glsi04g0578 | 944 | FunFam | Replication factor C subunit 1 | 173 | 277 | - | - | |
| Glsi04g0578 | 944 | SMART | AAA_5 | 386 | 524 | IPR003593 | GO:0016887 | |
| Glsi04g0578 | 944 | PIRSF | RFC1 | 9 | 922 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Glsi04g0578 | 944 | SMART | BRCT_7 | 200 | 278 | IPR001357 | - | |
| Glsi04g0578 | 944 | FunFam | Replication factor C subunit 1 | 595 | 704 | - | - | |
| Glsi04g0578 | 944 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 12 | 924 | - | - | |
| Glsi04g0578 | 944 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 594 | 739 | IPR008921 | GO:0003677|GO:0006260 | |
| Glsi04g0578 | 944 | MobiDBLite | consensus disorder prediction | 856 | 944 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0578 | 1 | 903 | Core DNA Replication Machinery Family | AT5G22010 | 69.989 | 0.0 | 1165 |