Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0576 ATGGATCCATTCCTCCGCAAGCTCCACCGCCACCTTCTTGCATGGCTTGATCGATCTCGCTCCGGTGAGCTATATTTTGTGAGGCGAGTTTCATACAAGGACATTAAAAGGGCAACGGATGGTTTTCACAGAATTATATATAGCAATTCTCAAGTTGCTGCATACACAGCAAGGTTTCAAGATGGTGGTGTTTCTTTAGTGAAAGAGGTAAAAAGTTGTGATCAAGGAAATGACATTTTCTACAGTGAAGTGCAATTCTTGGGGCGATTGCATCATCGCCACCTTCTGTCACTCAAAGGGTTTTCCGTGGGAGATAAGAGGGAGACCAATTTTTCTCTCAGCTCTTGTTTGGAAATCACAAACTTGTATCTCCCAATCAGGTGTAATCTCATGCTTGATCAATGTTCATATTTCATCTTTGACAACATAGAAAATGGAAGCTTAAAGGAGCACCTCAATGATCCCCTCAAAACTCCCTTAAATTGGAGGACGAGGTTACAAATAGCGATTGGTGTAGTAGCTGCACTGGAATACCTGTTTCTTTTCATTGAAACACCAATATGCCATGTCTCCATCAGCTCGAGCAATATTATGTTAGATGAGAACTTCACAGCTAAAATATCCGACTATGGCCTTCTCAGTTCTGGTGGAAATTCTGTTAAAGATTACTTGGGCCAGAAAAGCGGTAACATAGTGTTCCAACTTGGAGTTCTCATTCTGGAACTTATCACTGGTCAGCCTTCAGATATAGAAGGTTCCAATCTAATCCAATGGATTCAAGAATCCTGTTTTTACAGTTCCGTACATAAAATGATAGACCCAGATCTGGGAAACAATTATAATTCTATGGAGCTAAAAAACCTCCTAGCTGTTGCAAATTTATGTATCAAATCAAGTGACAAGCCTGCATTTACAATCCCCCAATTATTTCGGTATCTACAGAAGAAGGTTGATATTCCCCGAGACTAA 969 0.4045 MDPFLRKLHRHLLAWLDRSRSGELYFVRRVSYKDIKRATDGFHRIIYSNSQVAAYTARFQDGGVSLVKEVKSCDQGNDIFYSEVQFLGRLHHRHLLSLKGFSVGDKRETNFSLSSCLEITNLYLPIRCNLMLDQCSYFIFDNIENGSLKEHLNDPLKTPLNWRTRLQIAIGVVAALEYLFLFIETPICHVSISSSNIMLDENFTAKISDYGLLSSGGNSVKDYLGQKSGNIVFQLGVLILELITGQPSDIEGSNLIQWIQESCFYSSVHKMIDPDLGNNYNSMELKNLLAVANLCIKSSDKPAFTIPQLFRYLQKKVDIPRD 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0576 322 ProSiteProfiles Protein kinase domain profile. 32 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0576 322 PANTHER OS01G0253100 PROTEIN 25 317 - -
Glsi04g0576 322 Gene3D Transferase(Phosphotransferase) domain 1 232 321 - -
Glsi04g0576 322 Gene3D Transferase(Phosphotransferase) domain 1 143 231 - -
Glsi04g0576 322 FunFam probable receptor-like protein kinase At1g49730 232 321 - -
Glsi04g0576 322 Gene3D Phosphorylase Kinase; domain 1 17 109 - -
Glsi04g0576 322 Pfam Protein tyrosine and serine/threonine kinase 78 216 IPR001245 GO:0004672|GO:0006468
Glsi04g0576 322 SUPERFAMILY Protein kinase-like (PK-like) 24 290 IPR011009 -
Glsi04g0576 322 SMART tyrkin_6 64 310 IPR020635 GO:0004713|GO:0006468
Glsi04g0576 322 FunFam Protein kinase superfamily protein 16 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0576 Glsi-ChrGlsi04 3946370 3950449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0576 22 318 Receptor kinase-like Gene Family AT3G19300 32.609 1.98e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Glsi04g0576 PK_Tyr_Ser-Thr 2.3e-10 CL0016