Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0565 ATGGATGAAATAGAAGTTCCTCCAGAGTTTCTCTGCCCCATCTCTTTGCAACTTATGAGAGACCCCGTTACGGTTTCTACAGGAATCACCTACGATAGAGCGAACATAGAGAGATGGTTATTTTCATGCAAGAACACCACCTGCCCTGTTACTAAACAATCACTGTTAGAAACAGATCTTAATCTCACCCCAAACCACACTCTCCGCCGTTTTATCCAAGCATGGTGTACCCTTAATGCCTCGTTTGGAATTGAACGTATTCCAACTCCAAAGCCACCCCTCGAAAGAACCCAGATCACCAAACTCCTCTCTGAAGCAAACAGGTTCCCTGATAAGCAGCTCAAATGCCTTAGAAGGCTTCGTTCTATTGCTTTTGAAAGTGAAAGCAACAAAACCTGTTTAGAGTCTGCAGGTGCAATAGAGTTCTTGGCTTCGGCCTTGAAGAACAACAGTAGTGAAGAAGCTGCTATTGATGTCTTGTTTCATCTAAACCCTTCTGAATCTCAGCTTAACAACCTGATGAAAAACGAAGGCATTCAATTTATAGAGTCTTTGGTTCAGATCTTGAAGCTTGGTAACTACCAATCTCGAGCTTATGCAACTATGTTATTAAAGTCAGCGTTTGAAGTGGCTGAACCAACCCAATTAACCAGTGTCAGAACTGAACTATTTGTGGAGATAGTGAAAGTGCTAAGAGATCAGATCTCCCAGCAGGCTTCTAAGGCTGCGTTGAAGCTTCTTGTAGAGCTATGTCCATGGGGTAGGAACAGAATCAAAGCAGTTGAGGGTGGTGCAGTTTTCGTCCTCATTGAGCTTCTTCTTCAAGGTTCTGACGAAAGAAGGGCATGTGAGCTCATGCTAGTGGCTTTGAATCAACTTTGTGGTTGTGCAGAAGGGAGGGCAGAGCTTTTGAATCATGGGGGAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTTTCCCACGTGGCAAGTGATAGAGGGGTTAGGATTTTGACCTCCATTTGTAGGTATTCTCCGACTTCAAGGGTCCTTCAAGAAATGCTGCAAGTTGGGGCTGTGTCCAAGTTATGTTTGGTGCTTCAAGTGGATGGAAGTTTGAAGACAAAAGAGAGGGCCAAAGAAATTCTTAAGTTGCATTCTAGGGTTTGGAAGAATTCCCCATGTATTCCTGTTCCTTTGAATTCATCGTATCCATGA 1200 0.4375 MDEIEVPPEFLCPISLQLMRDPVTVSTGITYDRANIERWLFSCKNTTCPVTKQSLLETDLNLTPNHTLRRFIQAWCTLNASFGIERIPTPKPPLERTQITKLLSEANRFPDKQLKCLRRLRSIAFESESNKTCLESAGAIEFLASALKNNSSEEAAIDVLFHLNPSESQLNNLMKNEGIQFIESLVQILKLGNYQSRAYATMLLKSAFEVAEPTQLTSVRTELFVEIVKVLRDQISQQASKAALKLLVELCPWGRNRIKAVEGGAVFVLIELLLQGSDERRACELMLVALNQLCGCAEGRAELLNHGGGVAIVSKKILRVSHVASDRGVRILTSICRYSPTSRVLQEMLQVGAVSKLCLVLQVDGSLKTKERAKEILKLHSRVWKNSPCIPVPLNSSYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0565 399 CDD RING-Ubox_PUB 7 60 IPR045210 -
Glsi04g0565 399 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Glsi04g0565 399 SUPERFAMILY RING/U-box 3 79 - -
Glsi04g0565 399 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Glsi04g0565 399 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Glsi04g0565 399 SUPERFAMILY ARM repeat 109 377 IPR016024 -
Glsi04g0565 399 Gene3D - 97 385 IPR011989 -
Glsi04g0565 399 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Glsi04g0565 399 PANTHER WDSAM1 PROTEIN 3 391 IPR045185 GO:0061630
Glsi04g0565 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0565 Glsi-ChrGlsi04 3853815 3855014 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0565 2 399 U-box Gene Family AT2G35930 55.309 9.38e-163 461