Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0564 ATGGATGAAATTGAAATTCCTCGGTATTTCGTCTGTCCCATTTCGCTTCAGATCATGAAGGACCCTGTGACGGCATTAACAGGCATAACATATGACAGAGACAGCATCGAGCAGTGGCTGCTTAAGGCCAAAGATTTCACATGCCCAGTTACGAAGCAGCCATTGCCAAGAGACTCTGACTTCATCCCGAACCACACATTACGCAGGTTGATCCAGGCATGGTGCTCCGCAAACGCAGCCCACGGTATTGATCGGATTCCAACCCCCAAATCCCCTCTTAACAAGACCCACCTCCAGAAACTTCTCGGAGATCTTCAACTTCCCCATTTGTACGAAACTTCACTGGTGAAAATGCATGCTCTGGCCACAGAGAACGAGAGGAACATTAAGTGCATGGCAGAAGCTGGTGCGACCAGGGCTATGGTTCCAGTTATCACCAAGAGATTCAAGGAAGGTGACACTACTTGCCTTGAAGAAGCCCTGAGAATTCTACGTCTGCTCTGGAATTCAACCACGGCGGAAATAAAGCCTCTGGTCTTTGAAAACTTGGACTTCATCAATTCTTTGATTTGGGTTTTGCAGCTTCACATGGACAACAACGTCAATATAGTAAACGAAGCAATGCCTATTTTGAAATCCACCATTGAAGTCATGGATTCAACACTTTTAGGCAGTTTAAAGCTTGACTTTTTCAGAGAAATGACAAGGGTATTAAGAAGCAGAGCTGTCTCTCAGCAAGCTATCAAATCCGCCTTGCATGTGCTTATAGAAACATGCCCATTAGGCAGAAACCGAATGAGAATCGTGGAAGCAGGTGCAGTTTTTGAACTCATCGAGCTTGAACTGGAAAAACCAGAAAAGAACATAACCGAGCTCATATTCAACCTTCTTGCACAACTATGTTCTTGTGCCGATGGAAGAGAACAGTTTCTGCAACACGCAGCGGGAATTGCAATGATTTCTAAAAGGGTTCTGAGAGTTTCCCCAGCAACTGATGACCGAGCTGTTCATATATTTTCGTTGATAGCCATGTATTCAGCATCAAAAAACGTTGTTCCGGAGATGTTGAGGGTTGGAGCTGTGTCGAAGCTTTGTATGGTGATGCAAGCAGATTGTGGTTCATATTTGAAAGAGAAAGCAAGAGGCATCCTTAAGTTGCACTCCAAAGCTTGGAATAATGCTCCTTGTATTCAAGTATATCTGTTAACCAGACACCAAAGGTGA 1224 0.4444 MDEIEIPRYFVCPISLQIMKDPVTALTGITYDRDSIEQWLLKAKDFTCPVTKQPLPRDSDFIPNHTLRRLIQAWCSANAAHGIDRIPTPKSPLNKTHLQKLLGDLQLPHLYETSLVKMHALATENERNIKCMAEAGATRAMVPVITKRFKEGDTTCLEEALRILRLLWNSTTAEIKPLVFENLDFINSLIWVLQLHMDNNVNIVNEAMPILKSTIEVMDSTLLGSLKLDFFREMTRVLRSRAVSQQAIKSALHVLIETCPLGRNRMRIVEAGAVFELIELELEKPEKNITELIFNLLAQLCSCADGREQFLQHAAGIAMISKRVLRVSPATDDRAVHIFSLIAMYSASKNVVPEMLRVGAVSKLCMVMQADCGSYLKEKARGILKLHSKAWNNAPCIQVYLLTRHQR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0564 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Glsi04g0564 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Glsi04g0564 407 Gene3D - 108 389 IPR011989 -
Glsi04g0564 407 FunFam RING-type E3 ubiquitin transferase 6 80 - -
Glsi04g0564 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Glsi04g0564 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Glsi04g0564 407 SUPERFAMILY RING/U-box 3 84 - -
Glsi04g0564 407 CDD RING-Ubox_PUB 7 58 IPR045210 -
Glsi04g0564 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Glsi04g0564 407 SUPERFAMILY ARM repeat 113 384 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0564 Glsi-ChrGlsi04 3848832 3850055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0564 2 397 U-box Gene Family AT2G35930 41.294 2.56e-105 315