Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0559 ATGGCTTCGACGTACTTTCATGGCAGCAGTTCAGAAATCCAATCTGATGGGTTGCAGACACTTTACTTAATGAACCCCAGCTACGTTAACGTACCCTACTCTGACACTCCTCCTCAGGTTCACCACCCAACTCCCAACATGCTCCTCGTTAATCCGAACACTCCCGCCCCCAACGCGCTCAACCTAGCCAACCTCTCTCACGCGCCGCCCCACAACCCCCTGATTGGTGTCACCATTCCCACCAACATGGTCGGATCCACTAACAGCCCAGACGATCCCACCAGCCGACCATCATTATTTGGACATCAGGAAATCGCTGGCGGCTTCCATGGCTTCACTACCGCCGCAGCCGCCCCTCGTGTCCACTATAACTTGTGGGGTTCAATAATTGATCCCCAAACGCCGTCAACTCCTTCTGCGGCGGCGGCTGCAACCGCATCTGGCAGTTCAGGTGGGGCTGCCGCTGCAGACTTTTCGCGTCAGATGGGCTTCCGGCGGCCAAGTCAGCAGGGCTTGTCACTGAGCCTTTCATCACAACAACAGACAGCATATAATAATAGGTCGGTTTCCGGCGAGCTGGACGTTCTGGGGCAAGCCCAAGTCGCTGCTGCTATATCGCCAACGAGCCATGGTGGCGTTGGATCAGGCGATGATAGGCAGATTCTAAGAAATTCTCCGTCCTCGGTGTCCAATGGAATTTCGAGCATGCAGAGTGTTATTTTGGGGTCTAAGTATTTGAAGGCTGCGCAAGAGCTTCTAGATGAAGTTGTTAGTGTGGGTAAGGGAATTCAAAAAGGCGAATCCATAGAAGGGACTAACAAAGAGAAGATGAAAGCGAACAGAGAATCAACAATATCTGGGATTAATGGTGATGGATCAAGTGGTGGAGGAGATAAAAGTGGCAAGCAAGGAGCTGAACTCAGCACGGCTCAAAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTTAGCATGCTTGATGAGGTGGAGCAAAGGTACAGACAGTATCACCACCAAATGCAGATTGTGATATCTTCATTTGAGCAGGCAGCAGGGTATGGTGCAGCGAAATCATACACAGCACTTGGCCTAAAGACTATCTCAAAGCAATTTCGATGTCTTAAAGATGCGATCTCTTCACAAATCAAAGCAACAAGCAAGAGCTTAGGTGAGGATGATTGCTTAGGAGCTAAGGTAGAAGGCTCGAGGCTTAGGTACGTTGACCATCATCTCCGGCAACAAAGGGCACTGCAGCAGCTGGGAATGGTCCAGCACAATGCTTGGAGACCTCAAAGAGGCTTGCCTGAACGAGCTGTATCCATTCTTCGTGCTTGGCTTTTTGAGCATTTCCTTCACCCTTACCCTAAGGACTCCGATAAAATTATGCTCGCAAAACAAACTGGACTTACTCGAAGCCAGGTATCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACTTGGAAGAAACCAAGGAGGAAGAGCAGCATAATGGCTCCAAGGACAACAACACAAATAGACCAAAAGAAACAAGCAAGGAGCTGAGTTCAACATCAAATGCTGCACTTGAATCTGGTGCCAATATTAGATTTGATCAGATTAAAGCTCTCCAATCAAAAACAGAAAGATTCAACAACCAAAACACTTGTCTAAGTCCAAACCAGCCTAGAAGCAGTTCTGAAATACAAAACTCTCCAAGTAGTATTCTTTCAATGGACGTGGAAATGAAGCCCGGAGAAACAAACCGATCACAAGGCATCACAAAGTTCGGTATTGAAAGGCACCACAAAAATCATGGCTACCCATTAATAAATGACAATGAAATTGCAAACCATGGTGGTGGTTACGGAGGATTCTCCATGGAAGACATTGGAAGGTTTAACGTGTCTGAGCAATTAGCTCCGAGGTTCCATGCAAACGGTGTTTCTCTCACTTTGGGACTTCCCCACAGTGAAAACCTTCCTCTCTCTAGCACTCAACATGGGTTTCTCTCTCAGAATATGCATTTGGGAAGGAGGCTTGAGATGGGTTCAAATGGAACTGAGTTTTGCGCTATCAACACAGCCCCATCTTCTCATTCAGGCACCAGTTATGAGAACATTGATATTCAGAACAGAAAGAGTTTTGCTTCCCAGCTATTGCAAGATTTCGTGACATGA 2181 0.4732 MASTYFHGSSSEIQSDGLQTLYLMNPSYVNVPYSDTPPQVHHPTPNMLLVNPNTPAPNALNLANLSHAPPHNPLIGVTIPTNMVGSTNSPDDPTSRPSLFGHQEIAGGFHGFTTAAAAPRVHYNLWGSIIDPQTPSTPSAAAAATASGSSGGAAAADFSRQMGFRRPSQQGLSLSLSSQQQTAYNNRSVSGELDVLGQAQVAAAISPTSHGGVGSGDDRQILRNSPSSVSNGISSMQSVILGSKYLKAAQELLDEVVSVGKGIQKGESIEGTNKEKMKANRESTISGINGDGSSGGGDKSGKQGAELSTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVISSFEQAAGYGAAKSYTALGLKTISKQFRCLKDAISSQIKATSKSLGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMVQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEEEQHNGSKDNNTNRPKETSKELSSTSNAALESGANIRFDQIKALQSKTERFNNQNTCLSPNQPRSSSEIQNSPSSILSMDVEMKPGETNRSQGITKFGIERHHKNHGYPLINDNEIANHGGGYGGFSMEDIGRFNVSEQLAPRFHANGVSLTLGLPHSENLPLSSTQHGFLSQNMHLGRRLEMGSNGTEFCAINTAPSSHSGTSYENIDIQNRKSFASQLLQDFVT 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0559 726 ProSiteProfiles 'Homeobox' domain profile. 425 488 IPR001356 GO:0003677
Glsi04g0559 726 SMART HOX_1 428 492 IPR001356 GO:0003677
Glsi04g0559 726 Pfam Homeobox KN domain 445 484 IPR008422 GO:0003677|GO:0006355
Glsi04g0559 726 Pfam Associated with HOX 239 379 IPR006563 -
Glsi04g0559 726 MobiDBLite consensus disorder prediction 207 229 - -
Glsi04g0559 726 MobiDBLite consensus disorder prediction 270 306 - -
Glsi04g0559 726 SUPERFAMILY Homeodomain-like 429 494 IPR009057 -
Glsi04g0559 726 MobiDBLite consensus disorder prediction 497 529 - -
Glsi04g0559 726 Coils Coil 312 332 - -
Glsi04g0559 726 FunFam BEL1-like homeodomain protein 9 431 493 - -
Glsi04g0559 726 SMART prehox3 234 380 IPR006563 -
Glsi04g0559 726 MobiDBLite consensus disorder prediction 135 154 - -
Glsi04g0559 726 MobiDBLite consensus disorder prediction 497 516 - -
Glsi04g0559 726 MobiDBLite consensus disorder prediction 553 572 - -
Glsi04g0559 726 Gene3D - 431 510 - -
Glsi04g0559 726 CDD homeodomain 428 489 IPR001356 GO:0003677
Glsi04g0559 726 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 154 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0559 Glsi-ChrGlsi04 3808239 3811800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0559 3 725 Homeobox Transcription Factor Family AT2G35940 42.010 1.31e-134 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi04g0559 POX 1.4e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1502 14 15453516 15456127 Glsi04g0559 04 3808239 3811800 CCT