Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0555 ATGGAAGTTAGCCGTACGAATATCGACATTTTTCTCACGTTTTGCCTCATTACAGTGGGTTACGGTGCTACTGACCCAAATGATCTCAAAATTCTGAATGATTTCAAGCAAGGGTTGGAGAATCCAGAGCTTCTCAAATGGCCAGACAATGGGGATGATCCGTGTGGCCCTCCTCTATGGCCTTATGTTTTCTGCTCTGGTCACAGAGTCACACAGATTCAGGCCAAGTCTCTGGGTCTGAAAGGATCATTACCTCCATCCTTTAACCAGCTCTCAGAACTCTACAATTTGGGTCTTCAACACAACAAGCTTAGTGGGATGTTGCCTACTTTCAGTGGATTATCCAAATTAGAATTCGCTTTCTTAAATGACAATGAATTTGATGCGATCCCTTCTGATTTCTTTAATGGGCTTAGCAGTATTCGGGTGTTGTCTTTGGAACAAAACCCATTAAATGCGAGTACTGGGTGGTCTCTACCTGTGGATTTAGAAAAATCAGTACAATTAACGAATCTTTCTCTTGTGAACTGTAATTTGGTTGGACCACTGCCGGATTTTCTAGGCACATTGCCGTCTCTCACGAATCTGTTTCTTTCATACAACAGACTGTCTGGTGGCATACCGGCTAGTTTCGGTCCGTCTTCTATCCAGATTTTGTGGTTGAATAATCAAGATGGTGGCGGGATGACTGGTACTATTGATGTTATTGCTTCAATGACTTCCCTAACACAGCTCTGGCTACATGGAAACCAGTTCACTGGGACAATTCCACAGAATATTGGAAATCTAACCTCCTTGGTGGAGCTCAACCTCAATAGTAATCAACTTGTTGGCTTGATTCCAGAAACCCTGGCCAATATGGAGCTTAAGATATTGGTGTTAAACAATAACCGGCTAATGGGTCCCATACCAATGTTTAAGGCTGGTAATGTTTCTTATGATTTCAATTTGTTTTGTCAACCTAAACCTGGTCTTGAGTGTGCCCCTGAAGTTACTGCGCTACTAGACTTTCTCAGTAATCTGAATTACCCACTAATTCTCACTTCTGGATGGTCTGGTAATGAACCATGTGTCGGGCCATGGCGGGGATTGAGCTGCAATCCCAAGTCAGAGTTATCTATTATCAATTTTCCGAAGCATAAGCTCAATGGTTCTCTGAGTCCCTCACTTGCTAAGTTAGAATCACTTCTTGAAATTAGGCTGGGAGGAAATAATTTAACTGGAAAAATTCCTAGTAATTTCACTGAATTGAAGTCTTTGAGGTTACTGGATTTAAGTGATAACAATCTTGAGCCCCCATTGCCAAACTTTCTTGATGGTGTGAAGCTTATAGTTAATGGTAACCCTCTTCTTGCTAACCAAACTGAAACAAGTCCCCTGCCTATTAGCAGCCCACCACCTTCGAGTTTGCAACCATCACCTCCTTCGAGTTTGCAACCATCACCACCTTCGAGTTTGCAACCATCACCACCATCATCCCATAACCTACCTTCCCCGAGTCAGAGTACAAGGTCTGTCCAAGTTCAATCCCACCAAAATGACTCTAAAAGACTCAAAACACTAGCAATAGTCGCTGGAGCCGCAGTTTTTGTACTTGTAGCTCTTTTGGTTGTTTTTCTTCTCATATGTCGCTCAAAGAAGAAGAAATCCTTCTTGGATGAACCTAATTCCATTGTGGTTCACCCTCGCGACCCATCCGATCCAGAAAATATGGTTAAAATTGCAGTTGCAGATAACACTGCTGGAAGCTTATCAACAACGACTGGGACAACCTCTTTGAGTAGCATTAGTGGTGAAACTGAAAATTCTCATGTAATTGATGCTGGTAACCTTGTCATCTCTGTTCAAGTTCTACGCAAGGTTACCAAGAATTTTGCTCCAGAAAATGAGCTAGGCTGTGGTGGGTTTGGAACTGTTTATAAAGGTGAACTTGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGATGGTGGAGTTATTAGCAGTAAGGCACTGCAGGAGTTTCAGGCTGAAATAGCTGTTCTTTCCAAGGTCCGTCACAGACATTTGGTCTCTCTGTTAGGATATTCCATTGAAGGCAACGAAAGACTTTTGGTTTATGAATATATGCCTCTAGGTGCTCTAAGCAGGCATCTTTTTCATTGGAAAAGCCTGAAATTGGAGCCTTTGTCTTGGTCACAGAGGCTCGTGATAGCACTTGATGTTGCTAGAGGGATGGAATACCTTCATGGTCTTGCCCGCCAGATCTTCATCCACCGAGACCTTAAGCCTTCAAATATTCTACTTGGTGATGACTTTCGCGCAAAAGTTTCAGATTTTGGTCTGGTGAAACTTGCCCCAGATGGCGAGAAGTCTCTAGTAACCAGACTTGCTGGAACATTTGGATACCTTTCCCCTGAATATGCAGTGATGGGGAAAGTCACCACTAAACTTGATGTGTTCAGCTATGGTGTGGTGTTGATGGAGCTTCTGACTGGACAAATGGCTCTTGATGAGAGCCGGCCAGAGGAGAGCCGATACTTGGCTGAATGGTTTTTGCGGATAAAATCAAGCAAAGAAAAGCTTATGGCTGCCATTGATCCAGTCCTTGAGGCAACTGAAGAGACTTTCAAGAGTATTTCCATTATAGCTGAACTTGCTGGACATTGCGCCGCAAGGGAAGCAAACCATCGGCCAGATATGGGTCATGTGGTCACTGTAATTGCAGCATTAGTAGAGAAATGGAGACCATTTGATGACGAATTTGATTGTTTAACTGGCTTTGGCTTCCGTCAACCACTTGACCAGATGGTGAAGGTTTGGCAGGAAGGAGAAACAAGAGAGTTTAGCTATACTACTAGCTTTGAAGACAGCACGGGCAGTATACCAACTAGGCCTCTTGGGTTTGCAGACTCCTTTTCTTCTGCTGATGCTCGATAA 2919 0.433 MEVSRTNIDIFLTFCLITVGYGATDPNDLKILNDFKQGLENPELLKWPDNGDDPCGPPLWPYVFCSGHRVTQIQAKSLGLKGSLPPSFNQLSELYNLGLQHNKLSGMLPTFSGLSKLEFAFLNDNEFDAIPSDFFNGLSSIRVLSLEQNPLNASTGWSLPVDLEKSVQLTNLSLVNCNLVGPLPDFLGTLPSLTNLFLSYNRLSGGIPASFGPSSIQILWLNNQDGGGMTGTIDVIASMTSLTQLWLHGNQFTGTIPQNIGNLTSLVELNLNSNQLVGLIPETLANMELKILVLNNNRLMGPIPMFKAGNVSYDFNLFCQPKPGLECAPEVTALLDFLSNLNYPLILTSGWSGNEPCVGPWRGLSCNPKSELSIINFPKHKLNGSLSPSLAKLESLLEIRLGGNNLTGKIPSNFTELKSLRLLDLSDNNLEPPLPNFLDGVKLIVNGNPLLANQTETSPLPISSPPPSSLQPSPPSSLQPSPPSSLQPSPPSSHNLPSPSQSTRSVQVQSHQNDSKRLKTLAIVAGAAVFVLVALLVVFLLICRSKKKKSFLDEPNSIVVHPRDPSDPENMVKIAVADNTAGSLSTTTGTTSLSSISGETENSHVIDAGNLVISVQVLRKVTKNFAPENELGCGGFGTVYKGELEDGTKIAVKRMDGGVISSKALQEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLKLEPLSWSQRLVIALDVARGMEYLHGLARQIFIHRDLKPSNILLGDDFRAKVSDFGLVKLAPDGEKSLVTRLAGTFGYLSPEYAVMGKVTTKLDVFSYGVVLMELLTGQMALDESRPEESRYLAEWFLRIKSSKEKLMAAIDPVLEATEETFKSISIIAELAGHCAAREANHRPDMGHVVTVIAALVEKWRPFDDEFDCLTGFGFRQPLDQMVKVWQEGETREFSYTTSFEDSTGSIPTRPLGFADSFSSADAR 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0555 972 Gene3D Ribonuclease Inhibitor 26 320 IPR032675 -
Glsi04g0555 972 SMART serkin_6 625 901 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0555 972 ProSitePatterns Serine/Threonine protein kinases active-site signature. 750 762 IPR008271 GO:0004672|GO:0006468
Glsi04g0555 972 MobiDBLite consensus disorder prediction 454 512 - -
Glsi04g0555 972 Gene3D Phosphorylase Kinase; domain 1 586 702 - -
Glsi04g0555 972 Pfam Leucine rich repeat N-terminal domain 329 367 IPR013210 -
Glsi04g0555 972 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Glsi04g0555 972 MobiDBLite consensus disorder prediction 496 512 - -
Glsi04g0555 972 FunFam Leucine-rich repeat receptor-like kinase 329 454 - -
Glsi04g0555 972 ProSiteProfiles Protein kinase domain profile. 625 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0555 972 FunFam Receptor-like kinase TMK4 26 324 - -
Glsi04g0555 972 Gene3D Transferase(Phosphotransferase) domain 1 703 914 - -
Glsi04g0555 972 SMART LRR_typ_2 114 137 IPR003591 -
Glsi04g0555 972 SMART LRR_typ_2 393 416 IPR003591 -
Glsi04g0555 972 SMART LRR_typ_2 138 166 IPR003591 -
Glsi04g0555 972 SMART LRR_typ_2 417 440 IPR003591 -
Glsi04g0555 972 SMART LRR_typ_2 91 113 IPR003591 -
Glsi04g0555 972 SMART LRR_typ_2 190 213 IPR003591 -
Glsi04g0555 972 SMART LRR_typ_2 263 286 IPR003591 -
Glsi04g0555 972 SMART LRR_typ_2 239 262 IPR003591 -
Glsi04g0555 972 SUPERFAMILY Protein kinase-like (PK-like) 601 906 IPR011009 -
Glsi04g0555 972 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524
Glsi04g0555 972 Pfam Protein kinase domain 628 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0555 972 FunFam receptor protein kinase TMK1 703 920 - -
Glsi04g0555 972 Gene3D Ribonuclease Inhibitor 329 455 IPR032675 -
Glsi04g0555 972 FunFam receptor protein kinase TMK1 587 702 - -
Glsi04g0555 972 SUPERFAMILY L domain-like 30 446 - -
Glsi04g0555 972 PANTHER OSJNBA0070M12.3 PROTEIN 12 972 - -
Glsi04g0555 972 CDD STKc_IRAK 631 901 - -
Glsi04g0555 972 MobiDBLite consensus disorder prediction 460 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0555 Glsi-ChrGlsi04 3754154 3758141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0555 82 906 Receptor kinase-like Gene Family AT5G07280 31.342 1.21e-82 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi04g0555 Pkinase 1.1e-42 CL0016