LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g0551	ATGCCAGCGTGGCAGACGAAGGGGGGTGGGGTTCAAGTTGGCAATGCCACAGACAGTGGAGTGAAGCCAAAGCACGAGGAGCGCACGTTGCTCTCACGAACTCTTAGGGAGGAGAAAAATCAGAAAGTTTTCATCTTGCTAGTGATTAGCTTGCGGAAGCAATGTAGAATAGGCAAATTGCAGCACTGGGCAGAGAACACCAGCTTGGAGCTCAATTGGGCATTTCGTTTGATTGGATCGGGACTAATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGTGGAGCTTTTGGAGCTGCTATTCTAGTCCATCACAAGGCCGAGAAGAAGAAATACGTGTTGAAAAAAATCAGGCTTGCGCGACAGACCGAACGCTGTAGGAGATCTGCTCATCAAGAGATGGCTCTTATTGCCCGAATCCAGCACCCTTACATAGTGGAATTTAAGGAAGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCGAATGGGGTTTACTTTCCTGAAGAGAAACTATGTAAGTGGTTTACCCAATTACTATTGGCAGTGGAATACCTACATTCTAACTTTGTTTTGCATCGCGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTGGGGGATTTTGGGCTTGCTAAGACATTAAAAGCAGATGACCTGGCTTCATCGGTAGTAGGAACTCCCAATTACATGTGTCCTGAATTACTTGCAGATATCCCTTATGGATTCAAATCTGATATTTGGTCGCTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGCTTGATAAGCAAGATAAATCGTTCCTCTATTGGTCCTTTGCCTTCCCATTATTCCCCATCCTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAGCCCTGAGCATCGGCCTACGGCATCTGAGATCTTGAAGCATCCTTATCTGCAACCTTATGTTGAACAGTATCGTCAATCTTTCAGTCCTCCAACAGCCTGTTCTCCAGAAAAGCCAATTTCTACTTCCCATGATCCTCGAAGAAATATGGCTGAAAGTCAAAACAGTAGCAGTTCGAGTAGTGATAAAGATAGTTTGATGTCCAATGAGAGAAACATTTCAACAGCGGCACTGAAGTGTGATATCAAAGCCACTGAGACAGATCTCGCATCTATTGATGATGAAGATGGCTCTGAGCATCTTCCTCCTAGTGAAGAAGAAAATACCTCCAGCACTGGTAATGCTAAAACAGATGGGCAAGAGGTGATGAAACCATGGTATAGTGAACAGCGAGCTGTTGTTGAATCCAAGCAACCAAAAACAATAAAAAATATAATGATGGCATTAAAAGAGGGAAGAGTTAGAGAAAATGGTTCTCCAATGAGAGGCAATCGCATAAAGGCTGGTGGTGCATCAACACTGAAAGCAAACGCAGAGACATTGCCTAAATTGCCCAAATCCAATGTTGTTGCTCCTGGTTTCAAGCCTAATTTAGAGTCTCTAACTGTTGCACCTGCGAAGACCTCCCCTGATCCTGCAAAACGAATGCAGGGCTCACATCCTTTAAAGAATCAGTTACTGATGATGGACTCCTCACCAAAAACTAAACCCAGAAATGACGGGACTCCCCCATCTGGTCCTATTAAACAAGTAGAAGAAGATGGAGTTCCAGCCAAGCTGAGGCAAAGGACCCCCCCATGCTTACTTAGACGACCTTCATTTCCAGGAGGAATGAGGCAGGTTGGGCTTGATATTCCTAATGCAGCAAGTGATCCGGATAAGTTAGGTCCAAATAAAATAGCTCAGGAGCCTGACAAGAGTCATCATCAGTTGCTCAATGGTCATATACCACATGTTTCTAGAGAGATTACAGAGCCTCCGAAGGTTTTCGAACAATGTTCCAAAGGAATGCAAACAGATAGCAGCAATTCTTTTTCATCTTCAGTGTCTATTCAAGGTTTTGAACTTTCTGATGATGGTACAAATTTTATTGACATGCTAGAACAGATGCCTCCTGATCTTGAGAGTGCAACACACATTGGAAGTGTAAAATCACATCCGGACAGCAGGTCACCTGCTACCTATTTGCATTGTGAGATGGCTGAGAAAATGTCCAGGGAAACCTCAGAGGCTACCCTGAATCTTCAGAATACGATTACTAGTAATGAGAAAGTAAGTTCCAGTTTAAATGCTGATCCCCCAGCTCAAGATTCTAAGGAAGTATTTGCCTCCGAAGAAGGGCTCCCCATAAATCAGACATGTATATCTGCTGCTACCTCATGTGATAATAGATCTATAGGTCCCTGTGTTAAAGCCCCTGAAGAAATCAAAGATCTTCAAGATACTACTAAGAAAGTGACTTCAACCAATACTCTCCAACTTCCACTCCTGAGTTCTGGAGAAAAGGTAGTTTCCGAAGAAGTTTCTCCAGTAAGCAAGCTCAATAATAGGCCTGATACAGTTAGCCAGGCAAAACCTGTGTTTATGTCCACTGGCGATGACAAATTCACTGTAATGGAAAGACTGTCATTAGTGGCTGAAACTGGTTCGCCAATTACCTGTACCAAGAGCCAGAAAAGTTTGCAAGAAGAGAAAGGAACTGTTTTACAGAATCAAATGACAGAAAGGCCAGCTGTGGGCCATGGCCATCTTCCTCCAGCTTTTGATGAAGTCATTCATGTTATACGGCATAGCAGTTACCGTGTTGGGAGTGAGCAGCCAGTAAAGGAATCTGTGGAGGTGGGAGTTCAGAATGTGGATGTTGGTAAATTTATCAATGTTGTAAGGGATGATTTAGAAATGAGAAACAAGAGCACTCCTCTGACCTTTAAATCTCCAGGTTGCTCTGAAGCTATGAACTTGAAGTCAAATATTTCCGATAAATTAGAAGTGAGAAACATGAGCACTCCACCAACCCTTAAATCTCCAAGTTGCTCTGATGCTTTGAGCTTGGAGTCAAATATTTCTGATCAATTAGAAGTGAGAAACATGAGCACTCCTCCAACCCTCGAATCTTCAAGTTGTTCTGATATGTTGAGCTTGAAGTCAAATATTTCTCATCATTCTGGTGTTAAGCAACTAGATGTGAGAAATCCTGTTTCTTTAGTTTCGAAATCCGACTCCTTGACTAAATATAACTCTTCAATGACTGAAGAGGAAACACCAGCAAAGGAAACTTTGGATGTTACATCATTTCAGCAGAGAGCAGATGCCCTTGAAGGGCTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAATAGATTGGAAGAACTTGCGGTTGTTCTAAAGCCCTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCTAGGAGTTTAAAAGGAATGATGAGCGAGGACAATGGGGGACGCTGTTCATGA	3471	0.4333	MPAWQTKGGGVQVGNATDSGVKPKHEERTLLSRTLREEKNQKVFILLVISLRKQCRIGKLQHWAENTSLELNWAFRLIGSGLMESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPSHYSPSLKTLIKGMLRKSPEHRPTASEILKHPYLQPYVEQYRQSFSPPTACSPEKPISTSHDPRRNMAESQNSSSSSSDKDSLMSNERNISTAALKCDIKATETDLASIDDEDGSEHLPPSEEENTSSTGNAKTDGQEVMKPWYSEQRAVVESKQPKTIKNIMMALKEGRVRENGSPMRGNRIKAGGASTLKANAETLPKLPKSNVVAPGFKPNLESLTVAPAKTSPDPAKRMQGSHPLKNQLLMMDSSPKTKPRNDGTPPSGPIKQVEEDGVPAKLRQRTPPCLLRRPSFPGGMRQVGLDIPNAASDPDKLGPNKIAQEPDKSHHQLLNGHIPHVSREITEPPKVFEQCSKGMQTDSSNSFSSSVSIQGFELSDDGTNFIDMLEQMPPDLESATHIGSVKSHPDSRSPATYLHCEMAEKMSRETSEATLNLQNTITSNEKVSSSLNADPPAQDSKEVFASEEGLPINQTCISAATSCDNRSIGPCVKAPEEIKDLQDTTKKVTSTNTLQLPLLSSGEKVVSEEVSPVSKLNNRPDTVSQAKPVFMSTGDDKFTVMERLSLVAETGSPITCTKSQKSLQEEKGTVLQNQMTERPAVGHGHLPPAFDEVIHVIRHSSYRVGSEQPVKESVEVGVQNVDVGKFINVVRDDLEMRNKSTPLTFKSPGCSEAMNLKSNISDKLEVRNMSTPPTLKSPSCSDALSLESNISDQLEVRNMSTPPTLESSSCSDMLSLKSNISHHSGVKQLDVRNPVSLVSKSDSLTKYNSSMTEEETPAKETLDVTSFQQRADALEGLLELSAELLQQNRLEELAVVLKPFGKDKVSPRETAIWLARSLKGMMSEDNGGRCS	1156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g0551	1156	CDD	STKc_Nek	89	344	-	-
	Glsi04g0551	1156	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	87	1104	-	-
	Glsi04g0551	1156	MobiDBLite	consensus disorder prediction	354	395	-	-
	Glsi04g0551	1156	FunFam	Serine/threonine-protein kinase Nek2	87	169	-	-
	Glsi04g0551	1156	Pfam	Protein kinase domain	90	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g0551	1156	MobiDBLite	consensus disorder prediction	431	445	-	-
	Glsi04g0551	1156	MobiDBLite	consensus disorder prediction	373	395	-	-
	Glsi04g0551	1156	MobiDBLite	consensus disorder prediction	1	26	-	-
	Glsi04g0551	1156	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	211	223	IPR008271	GO:0004672\|GO:0006468
	Glsi04g0551	1156	MobiDBLite	consensus disorder prediction	530	584	-	-
	Glsi04g0551	1156	Gene3D	Transferase(Phosphotransferase) domain 1	172	416	-	-
	Glsi04g0551	1156	MobiDBLite	consensus disorder prediction	551	566	-	-
	Glsi04g0551	1156	FunFam	Serine/threonine-protein kinase Nek5	172	417	-	-
	Glsi04g0551	1156	Gene3D	Phosphorylase Kinase; domain 1	73	169	-	-
	Glsi04g0551	1156	ProSitePatterns	Protein kinases ATP-binding region signature.	96	119	IPR017441	GO:0005524
	Glsi04g0551	1156	MobiDBLite	consensus disorder prediction	418	448	-	-
	Glsi04g0551	1156	SUPERFAMILY	Protein kinase-like (PK-like)	86	396	IPR011009	-
	Glsi04g0551	1156	SMART	serkin_6	90	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g0551	1156	ProSiteProfiles	Protein kinase domain profile.	90	344	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g0551	Glsi-ChrGlsi04	3729734	3738543	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g0551	96	345	MAP Kinase Kinase Kinase	AT1G53570	31.765	3.40e-37	146

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Glsi04g0551		Pkinase	1.8e-66	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi14g1519	14	15575352	15580435	Glsi04g0551	04	3729734	3738543	CCT