Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0546 ATGTCAGGTACGCAAACTCCCACTTCGTCGTCTCATCCCACGGACCAGATCATGCACTCCATGAAACGTCAAATCCCATTCTCGTCTATGAAGCCTCCGTTTGTTGCTCCGGCGGATTATCATCGCTTCGCACCCGACCATCGGCCAGCTGCTGACCAAGAAGCCGAGACCATCGTCATTAAGTCTCCTCAATTGAAGCGGAAGAGTAGAATAGCCAATTATGAAGCTGATTCTGGTGATAGGATGACCGCTGGATCTACTGAAGCAGCTAACAGTCCTTTTCAGACTCCTGTATCAGGAAAAATGGGCAAGGCAAGCAAAGCTTCGAGGCTTACAAAATGCAACAAAACCGGACCTCAAACCCCAGCTTCAAATATTGGTTCTCCTTCTGGCAACAATCTTACTCCAGCTGGTCCATGTCGCTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCGGAGGATGGTATTCTTGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAATAGAATTCACTGGAAGGGATTGGATGTGCCTAGGCCAGGGGAGGCTGATGATAGTTTGGCTAGTTTACAGACAGAAGTTGAAAATCTTACTTTGGAGGAGCACCGATTAGATGAACAAATAAGGGAGATGCAAGAAAGACTAAGGGGCCTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTGTCACTGAAGATGATATAAAGGGCTTGCCCTGCTTCCAGAACGAAACTTTAATAGCTATTAAAGCTCCACATGGCACCACTTTAGAGGTCCCTGATCCTGATGAGGCCGTTGATTATCCCCAAAGGAGATACAGGATAGTCCTCCGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAAAAGTTTGAGGAGATCAATGAAGTAGATGCAGCACCCAATCTTCCATCAAGTCCAGAGTTCAACAGGCCTCCAGCAACAGCAGTCACTGAGGAAAGAGGGAAGGACATAGAAATGCAGGGACAAGATGGTTATAGAGCTTGTTCAGATTATAGTGCCTCACAGGACTTCGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATAGTGATGCTGATTACTGGCTTCTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGAAACACTTCATGAAGATTATTGCATGCCTCGTGTGAGCACAGCACGACCTGAAACTCCTCCTTCAAACACGAGTCAGGTGCCTTGTGCAGCTAATCCTACTAGAGGTTGA 1386 0.4473 MSGTQTPTSSSHPTDQIMHSMKRQIPFSSMKPPFVAPADYHRFAPDHRPAADQEAETIVIKSPQLKRKSRIANYEADSGDRMTAGSTEAANSPFQTPVSGKMGKASKASRLTKCNKTGPQTPASNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGLDVPRPGEADDSLASLQTEVENLTLEEHRLDEQIREMQERLRGLSEDENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINEVDAAPNLPSSPEFNRPPATAVTEERGKDIEMQGQDGYRACSDYSASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTEPGVEWNELETLHEDYCMPRVSTARPETPPSNTSQVPCAANPTRG 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0546 461 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Glsi04g0546 461 CDD E2F_DD 217 323 IPR032198 GO:0046983
Glsi04g0546 461 MobiDBLite consensus disorder prediction 438 461 - -
Glsi04g0546 461 MobiDBLite consensus disorder prediction 337 357 - -
Glsi04g0546 461 FunFam E2F transcription factor 1 135 208 - -
Glsi04g0546 461 MobiDBLite consensus disorder prediction 76 136 - -
Glsi04g0546 461 MobiDBLite consensus disorder prediction 441 461 - -
Glsi04g0546 461 Gene3D - 135 208 IPR036388 -
Glsi04g0546 461 MobiDBLite consensus disorder prediction 84 99 - -
Glsi04g0546 461 MobiDBLite consensus disorder prediction 110 136 - -
Glsi04g0546 461 PANTHER TRANSCRIPTION FACTOR E2F 69 420 IPR015633 GO:0000978|GO:0006357
Glsi04g0546 461 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Glsi04g0546 461 Gene3D - 213 323 - -
Glsi04g0546 461 SUPERFAMILY E2F-DP heterodimerization region 219 323 IPR037241 -
Glsi04g0546 461 Coils Coil 219 253 - -
Glsi04g0546 461 MobiDBLite consensus disorder prediction 1 33 - -
Glsi04g0546 461 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Glsi04g0546 461 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Glsi04g0546 461 MobiDBLite consensus disorder prediction 1 23 - -
Glsi04g0546 461 Coils Coil 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0546 Glsi-ChrGlsi04 3704248 3708374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0546 16 449 E2F-DP Transcription Factor Family AT5G22220 58.658 1.35e-162 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi04g0546 E2F_CC-MB 6.2e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0546 04 3704248 3708374 Glsi04g0546 04 3704248 3708374 ECH