Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0520 ATGGAGGATCTCCAACAACCTGGTTTTCGATTCTATCCAACAGAAGAAGAGCTAGTTGCCTTCTACCTTCACAACAAGCTCGAAGGCCAAAGAAATGATATGAACAGTGTTATCCCAGAGATTTCCATCTACGACGTAGAGCCTTGGCACCTTCCAAGGCTAGCAGGAGAGGTGTGTCGTGGAGACACAGAGCAATGGTTTTTCTTTTCACCCAGACAAGAGAGAGAGGCCAGGGGAGGCAGACCCACCAGAACCACGGCTTCTGGGTACTGGAAGGCCACGGGTTCTCCTGGTTATGTTTACTCTTCTGATAACAGAGTCATTGGGGTGAAGAAAACCATGGTTTTTTACAAAGGGAAAGCTCCAACTGGAAGGAAAACCAAATGGAAGATGAACGAGTACAGAGCTATTCAACTCTCAGCAGACTCAAACCAAACCAGCACAGCCATTCCTACGTTGAGGAACGAGTTCAGCTTGTGCCGAGTTTATGTGATATCGGGAAGCTTTCGAGCATTTGATCGACGCCCCCTAGAGTCGGAAACTTCCCGCTCAGGTGGAGACCGAAGTGGTGATCTGGCAGGGGGTGGAGGATCAAGCAGTACAAATTGGAACGTCAGTAGTGGGATACAAGAGCCTCTATGGGAATGGGAACAACTTAATTGGCTCTAA 669 0.4843 MEDLQQPGFRFYPTEEELVAFYLHNKLEGQRNDMNSVIPEISIYDVEPWHLPRLAGEVCRGDTEQWFFFSPRQEREARGGRPTRTTASGYWKATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRAIQLSADSNQTSTAIPTLRNEFSLCRVYVISGSFRAFDRRPLESETSRSGGDRSGDLAGGGGSSSTNWNVSSGIQEPLWEWEQLNWL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0520 222 Pfam No apical meristem (NAM) protein 7 135 IPR003441 GO:0003677|GO:0006355
Glsi04g0520 222 ProSiteProfiles NAC domain profile. 5 165 IPR003441 GO:0003677|GO:0006355
Glsi04g0520 222 MobiDBLite consensus disorder prediction 176 206 - -
Glsi04g0520 222 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 165 - -
Glsi04g0520 222 Gene3D NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Glsi04g0520 222 SUPERFAMILY NAC domain 6 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0520 Glsi-ChrGlsi04 3559530 3560392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0520 1 221 NAC Transcription Factor Family AT5G22380 57.983 4.32e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g0520 NAM 2e-32 No_clan