Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0504 ATGCCACGAGGAAAGGGAAATTCATCATCAGTTGCTAAGACATCTGAACCTGAAAAGCCAATTGAATCTGAAGAGAAGATTGATTATGATGAGGAAAATGATCCTGAGGAAATGATAGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAGGAAGTGGAGGAGATAGAGGAGGAGGTGGAGGAGGACGAGGACGAGGACGAGGAGGATGATGTTGAAGAAGTTGAAGATGATGATGTCATGCAAAATCTTAGCAGTGATGAGGCAAAGGTTGAAGATGAGGATGAGAAGGAAAAGCATGCTGAACTTCTTTCTCTTCCTCCCCATGGGTCTGAAGTATACATTGGTGGTATTCCTCTTGATGCCTCAACGGAAGATTTGAAGGCATTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTCGGATTATGAAAGGAAAAGATTTTGCTGAGAATAAGGGCTTTGCTTTTGTGACTTTTAGAAGTGTGGAACTGGCTTCGAAAGCCATTGATGTGCTAAATAATACAGAATTTAAGGGTAAAAAAATAAAATGTTCTAAATCTCAAGCAAAACACCGTCTTTTCATTGGTAATGTTCCCAGAAGCTGGGGAGAGGAAGATCTGAGGAAGGTTGTGACTGAGATTGGGCCTGGAGTTACTACAGTAGAACTAGTCAAGGATTTGAAGAACACAAACAATAACCGTGGATTTGCTTTTATCGATTATTATAACCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAACCCAACATTTAAGCTAGGTGATAATGCTCCAACTGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACTTACCTAAGAATGTAACTCAAGACCAATTAAAGACGCTTTTTGAACATCATGGGAAGATCACAAAGGTGGTTTTGCCACCAGCAAAGTCTGGGCAGGAAAAGAACAGAATTGGCTTTGTCCATTTTGCAGAGAGGTCAAGTGCGATGAAGGCACTTAAAAACACAGAGAGATATGAATTAGAAGGTCAGGTTTTGGAGTGCTCTCTGGCAAAGCCACAGGCTGATCAGAAGTCCTCCGGATCAAATATGCAGAAGTCAGGATTACTTCCAAGCTATCCACCTCGTGTGGGTTATGGTTTGGTTGGGGGTTCCTATGGTGCACTTGGTGCGGGATATGGCCCTGCAGCTCTTGCACAGCCCATGGTATATGGAAGGGGTCCAACTCCTGCTGGAATGGCCATGATGCCGATGCTTTTACCTGATGGACGGATTGGATATGTCCTGCAACAACCTGGCGTGCAACCACAAACCCCACCTTCACATCAGAGGGGTGGCAGGAGTGGCGGTGGGAGTGGTAGCAAGAGCTTTGGCAGTTCAAGCAAGGGAAGGCACAGCAATGATAGTGGCCAAGGGCGCAGATACCGCCCATATTAG 1467 0.4431 MPRGKGNSSSVAKTSEPEKPIESEEKIDYDEENDPEEMIEEEIEYEEVEEEEVEEIEEEVEEDEDEDEEDDVEEVEDDDVMQNLSSDEAKVEDEDEKEKHAELLSLPPHGSEVYIGGIPLDASTEDLKAFCESIGEVTEVRIMKGKDFAENKGFAFVTFRSVELASKAIDVLNNTEFKGKKIKCSKSQAKHRLFIGNVPRSWGEEDLRKVVTEIGPGVTTVELVKDLKNTNNNRGFAFIDYYNHACAEYSRQKMMNPTFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQDQLKTLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERSSAMKALKNTERYELEGQVLECSLAKPQADQKSSGSNMQKSGLLPSYPPRVGYGLVGGSYGALGAGYGPAALAQPMVYGRGPTPAGMAMMPMLLPDGRIGYVLQQPGVQPQTPPSHQRGGRSGGGSGSKSFGSSSKGRHSNDSGQGRRYRPY 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0504 488 SMART rrm1_1 112 185 IPR000504 GO:0003723
Glsi04g0504 488 SMART rrm1_1 286 359 IPR000504 GO:0003723
Glsi04g0504 488 SMART rrm1_1 192 269 IPR000504 GO:0003723
Glsi04g0504 488 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 274 383 - -
Glsi04g0504 488 MobiDBLite consensus disorder prediction 441 476 - -
Glsi04g0504 488 Gene3D - 25 191 IPR012677 -
Glsi04g0504 488 MobiDBLite consensus disorder prediction 440 488 - -
Glsi04g0504 488 SUPERFAMILY RNA-binding domain, RBD 108 277 IPR035979 GO:0003676
Glsi04g0504 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Glsi04g0504 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 356 IPR000504 GO:0003723
Glsi04g0504 488 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 256 IPR000504 GO:0003723
Glsi04g0504 488 MobiDBLite consensus disorder prediction 83 100 - -
Glsi04g0504 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 363 IPR000504 GO:0003723
Glsi04g0504 488 Gene3D - 192 272 IPR012677 -
Glsi04g0504 488 CDD RRM_SF 113 185 - -
Glsi04g0504 488 SMART rrm2_1 286 359 IPR003954 GO:0003676
Glsi04g0504 488 SMART rrm2_1 112 185 IPR003954 GO:0003676
Glsi04g0504 488 FunFam RNA recognition motif-containing protein 21 191 - -
Glsi04g0504 488 MobiDBLite consensus disorder prediction 1 100 - -
Glsi04g0504 488 Gene3D - 273 397 IPR012677 -
Glsi04g0504 488 MobiDBLite consensus disorder prediction 27 82 - -
Glsi04g0504 488 Coils Coil 38 78 - -
Glsi04g0504 488 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 10 478 - -
Glsi04g0504 488 SUPERFAMILY RNA-binding domain, RBD 282 388 IPR035979 GO:0003676
Glsi04g0504 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Glsi04g0504 488 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 273 IPR000504 GO:0003723
Glsi04g0504 488 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 192 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0504 Glsi-ChrGlsi04 3441668 3445628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0504 133 446 Eukaryotic Initiation Factors Gene Family AT4G34110 24.069 3.04e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0504 04 3441668 3445628 Glsi04g0504 04 3441668 3445628 ECH