Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0496 ATGGCGAGTCACAGAATAGAAGAAACTGGTTTGTCTGAGTCACCTTCAAGTCATCATGTCCCTTATGGAGTTCTTCACGGGATTAATACTCCTGCATCAGGCTTAATGTACTGCTATGGTTTTTCTTTCATTCAAAAAATTTGCTGGGTTTTAGTTCCAGTCCTTGTATATCTGACATGGGTTTTGATTCTTTTTCTGCTTCATTATAGAAATCAAGGATCTGCTTTTGATTTTGGGGAACTGGAAGAAGCAATAGTTCTGCAAGGATTTGAGATTAGGAATGATGCAGGCAGAGCACGTATGGGAGGTTCAAAGTCAGGAGGGGAAAGCACCGATTCAGGATCAGCTATAAACACTCATTCAAGCAAAAACGAGCCTCAGTTTGAACCAGAATCTCCCATACGTAAAAAGGTATCTTCTTCAGATCATCATCATCAGCAACAGGAACGGCTTCAACAGGAGATGGCAAGTGATGCTTCAAGAACAGCCCCGTCACAGAATCAATCAGCTAACAAATCACCTCAGGAAAAGAGGAAGGGAGCTAGTTCCTCATCAGAGAAGCAGCTTGATGCAAAGACATTGAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTTCAGCAGCTAGAGTCTAGTAGAATAAAGCTTACCCAGATTGAACAAGACCTTCAAAGAGCGCGCTCTCAGGGACTGTTCTTGGGCTGTGCTGGATCTGGTGGCAACATAAGTTCTGGAGCTGCAATTTTTGACATGGAATATGCAAGATGGTTAGAAGATGATCACCGGCACATGACGGAGCTTCGGGCTGGTTTGCAGGCACCGTTATCGGATAATGAGCTAAGAGTTATTGTCGATGGATATTTGTCCCATTACGATGAGATTTTTCGTCTCAAAGGACTGGCTGCAAAATCAGATGTATTTCATCTTATTACTGGCATGTGGACTACTCCAGCTGAACGCTGCTTCCTTTGGATGGGTGGTTTTAGGCCCTCAGAGCTCATAACGATGTTGATACAACAATTAGAGCCACTAGCTGAGCAGCAAATAATGGGAATGTATGGCCTCAGACATTCTTCACAGCAAGCAGAGGAGGCTCTCTCTCAGGGCCACGAACAGCTCCAGCAGTCCGTGGTTGACACCATTGCCGGCGGCTCGGTCGGTGATGGCGTGCAACAGATGGTCGTAGCCATGAGCAAGCTTGCCAATCTTGAAGGATTTGTTCGCCAGGCTGATAACTTGAGGCAACAAACCCTTCACCAATTATGTCGGTTGCTGACAGTTCGTCAAGCAGCACGATGTTTCTTAGTCATTGGAGAGTACTATGGCCGCCTTCGAGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCATGATCAGCGACGATAACTCATGCCAAACAACTACGGAGTTGCAAATGATTCAAGCTCCTCAGACTCATTTTGCCAGTTTCTGA 1485 0.4559 MASHRIEETGLSESPSSHHVPYGVLHGINTPASGLMYCYGFSFIQKICWVLVPVLVYLTWVLILFLLHYRNQGSAFDFGELEEAIVLQGFEIRNDAGRARMGGSKSGGESTDSGSAINTHSSKNEPQFEPESPIRKKVSSSDHHHQQQERLQQEMASDASRTAPSQNQSANKSPQEKRKGASSSSEKQLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQIEQDLQRARSQGLFLGCAGSGGNISSGAAIFDMEYARWLEDDHRHMTELRAGLQAPLSDNELRVIVDGYLSHYDEIFRLKGLAAKSDVFHLITGMWTTPAERCFLWMGGFRPSELITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGHEQLQQSVVDTIAGGSVGDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFLVIGEYYGRLRALSSLWASRPRETMISDDNSCQTTTELQMIQAPQTHFASF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0496 494 PANTHER TRANSCRIPTION FACTOR TGA9 139 466 - -
Glsi04g0496 494 Pfam Seed dormancy control 272 347 IPR025422 GO:0006351|GO:0043565
Glsi04g0496 494 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 234 IPR004827 GO:0003700|GO:0006355
Glsi04g0496 494 Coils Coil 218 238 - -
Glsi04g0496 494 MobiDBLite consensus disorder prediction 106 128 - -
Glsi04g0496 494 FunFam BZIP family transcription factor 191 240 - -
Glsi04g0496 494 Gene3D - 191 240 - -
Glsi04g0496 494 Pfam bZIP transcription factor 191 230 IPR004827 GO:0003700|GO:0006355
Glsi04g0496 494 MobiDBLite consensus disorder prediction 98 193 - -
Glsi04g0496 494 CDD bZIP_HBP1b-like 192 243 - -
Glsi04g0496 494 MobiDBLite consensus disorder prediction 129 151 - -
Glsi04g0496 494 MobiDBLite consensus disorder prediction 152 178 - -
Glsi04g0496 494 SUPERFAMILY Leucine zipper domain 192 235 IPR046347 GO:0003700|GO:0006355
Glsi04g0496 494 MobiDBLite consensus disorder prediction 179 193 - -
Glsi04g0496 494 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 195 210 IPR004827 GO:0003700|GO:0006355
Glsi04g0496 494 SMART brlzneu 188 264 IPR004827 GO:0003700|GO:0006355
Glsi04g0496 494 ProSiteProfiles DOG1 domain profile. 255 463 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0496 Glsi-ChrGlsi04 3360075 3366489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0496 140 494 bZIP Transcription Factor Family AT1G08320 69.188 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi04g0496 DOG1 5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1556 14 15964870 15970203 Glsi04g0496 04 3360075 3366489 CCT