Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0486 ATGATGGGTTTGAGGGAGTGCAATGTAGAAGACAAGAATCTCTACTTTCATGCTCCAACTTTCATTGAATGGCTCAAACCATCTTCCTCTCCTTCATCACTATCCTCTCCTTCTTCTTCTTCTTCTTCTGTCACTCAACAGGAGACTATACAGTTTTTGCCTATTTTAAATGGGTTGGCCTCAAAAGAGGAAGAAGTTGGAGTGCAAAAGGAGGGTTTTGGAGTAAAACAAGAGAAGGTAGAGCAAGTGGCTGTGGCTTTGCACATTGGATTACCTAATTCTGAGGCTGATGAGAAGAAAGTTCTTGATGTTAAAGAAGAACCACCCATGAAGAAAAGCTTCCATGGCTGCCCTTTTAACCCTGAAAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTATTGGGCCTATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGGTCAGAATTTAGGAAAGGACCAGACTCACTTAGAGGAACACAGCCAGCTGCAATGCTGAGGCTACCATGTTATTGTTGTGCCCAGGGCTGCAAAAACAACATCAACCATCCAAGAGCAAAGCCACTCAAGGACTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCATGGCTCCAAGCCCTTCACCTGCAGAAAATGTGCCAAAACTTTTGCTGTCAAAGGGGATTGGAGGACCCACGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGATCCCTTAAAGATCACATTAGATCGTTCGGAAAGGGTCACAAACCCCATCCTTCTCTTGAAGGTTTTGAGGATGACAAGGATTGCTTCACCGGCTCCGAAGATGAACTTGCTCATACATGA 906 0.4426 MMGLRECNVEDKNLYFHAPTFIEWLKPSSSPSSLSSPSSSSSSVTQQETIQFLPILNGLASKEEEVGVQKEGFGVKQEKVEQVAVALHIGLPNSEADEKKVLDVKEEPPMKKSFHGCPFNPERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFTCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHKPHPSLEGFEDDKDCFTGSEDELAHT 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0486 301 Gene3D Classic Zinc Finger 220 280 - -
Glsi04g0486 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 277 IPR013087 -
Glsi04g0486 301 Gene3D Classic Zinc Finger 139 162 - -
Glsi04g0486 301 FunFam Zinc finger protein WIP2 193 275 - -
Glsi04g0486 301 PANTHER ZINC FINGER PROTEIN WIP2 28 291 IPR043584 GO:0003700|GO:0010468
Glsi04g0486 301 MobiDBLite consensus disorder prediction 273 301 - -
Glsi04g0486 301 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Glsi04g0486 301 SMART c2h2final6 187 219 IPR013087 -
Glsi04g0486 301 SMART c2h2final6 140 162 IPR013087 -
Glsi04g0486 301 SMART c2h2final6 224 244 IPR013087 -
Glsi04g0486 301 SUPERFAMILY beta-beta-alpha zinc fingers 210 244 IPR036236 -
Glsi04g0486 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Glsi04g0486 301 SUPERFAMILY beta-beta-alpha zinc fingers 131 163 IPR036236 -
Glsi04g0486 301 MobiDBLite consensus disorder prediction 271 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0486 Glsi-ChrGlsi04 3279645 3281830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0486 10 292 C2H2 Transcription Factor Family AT1G08290 56.213 2.23e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0486 None None None