Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0475 ATGGAGGAAAATCAGAATGGCGGCAATGCAAAGTCGGCGGTTCCGGAGAGCGAGGAGGAGGCCATAGTCGGACCGGGGCCAGCCCCTCGCTCTCGACCCAAACGACCCCTCCAGTTCGAGCAGGCCTACCTTGACGCTTTACCCTCTGCAAACATGTATGAGAAAAGTTATATGCATCGTGATGTGGTTACACATGTTGCTGTTTCAGCTGCAGAATTTTTCATAACTGGAAGTATTGATGGGCATTTGAAGTTTTGGAAGAAAAAGCCCACGGATATCGAGTTTGCAAAACACTTCAGATCCCATCTTGGTCCAATTGAAGGTCTAGCCGTTAGTATTGATGGTCTGCTTTGCTGTACTATATCAAATGACCGCTCTGTGAAAATATATGATGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCTTATGTACCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTCAAAGCTAGGCTTGCCCTTAGTGATAGAGACTCATGTTTTGTACACATATATGATGCACGAGCTGGTTCAAATGAACCTATCATCTCTAAAGAGATGCATTTGAATCCTATTAAAGTGATGAAGTACAATCCAGTATATGATTCTGTGATTTCGGCGGATACCAAGGGGCTCATTGAATACTGGAACCCCACTACTCTTCAATTCCCAGAGAATGAGGTGAATTTTAAATTGAAAAGTGATACCAGTCTCTTTGAAATTGTAAAATGCAAGACTTCTGTTTCAACTATTGAGGTCAGCCCAGATGGTAAGCAATTTTCCATAACATCACCGGATCGCAGGATACGTGTGTTTTGGTTCAGAACTGGTAAACTAAGGCGAGTTTATGACGAATCACTGGAGGTTGCTCAAGATCTTCAAAGAAGTGACACTCCCTTATATCGGCTAGAAGCCATTGATTTTGGCCGGAGAATGGCTGTTGAGAAGGAAATAGAGAAGACAGAAAGTGCCCCACATCCAAATGCACTTTTTGATGAAAGTTCTAACTTTCTTATATATGCGACCTTGCTTGGGATAAAAATAGTAAATTTACACACCAATAAAGTTGGCCGAATACTTGGAAAAGTGGAGAACAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGGGATCGAAGTGGGAAAAAAGTAAGAAAGATTCCTTCAGCAGCTGTAAATGTCAATGAAAGCAAGGAACCTTTGTCAGATCCCACACTTTTGTGTTGTGCTTTCAAAAAACACAGGATATATTTATTCAGTCGGAGAGAACCAGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATATGTTTAATGAAAAGCCTCCTCCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCAGTTACAACATCACTTCCAGAAAATGTGATTCTGCACACTACTATGGGTGATATTCACATGAAGTTATACCCAGAAGAATGTCCAAAAACTGTGGAAAACTTTACAACGCACTGTCGGAATGGCTATTATGACAATCTTATTTTTCACCGGGTTATCAAAGGTTTCATGATACAAACAGGTGACCCTCTAGGAGATGGCACTGGTGGGCAATCCATTTGGGGGAGGGAATTTGAGGATGAATTTCACAAAAGCTTAAGACATGATAGGCCTTTCACGCTGTCAATGGCAAATGCGGGCCCAAATACAAATGGCTCTCAGTTCTTTATCACCACAGTGGCTACTCCTTGGCTGGACAACAAGCACACCGTATTTGGTAGAGTTGTAAAGGGAATGGATGTCGTACAGGCTATAGAAAAAGTAAAGACAGACAAGACCGACAAGCCATACCAAGAAGTTAAAATTCTAAATGTCACTGTACCAAAGTCTTGA 1866 0.4175 MEENQNGGNAKSAVPESEEEAIVGPGPAPRSRPKRPLQFEQAYLDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSIDGHLKFWKKKPTDIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYVPGAVEWVYKQGDVKARLALSDRDSCFVHIYDARAGSNEPIISKEMHLNPIKVMKYNPVYDSVISADTKGLIEYWNPTTLQFPENEVNFKLKSDTSLFEIVKCKTSVSTIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDTPLYRLEAIDFGRRMAVEKEIEKTESAPHPNALFDESSNFLIYATLLGIKIVNLHTNKVGRILGKVENNDRFLRIALYQGDRSGKKVRKIPSAAVNVNESKEPLSDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDMFNEKPPPDELLAVSDIGKAVTTSLPENVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIEKVKTDKTDKPYQEVKILNVTVPKS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0475 621 Pfam WD domain, G-beta repeat 97 131 IPR001680 GO:0005515
Glsi04g0475 621 SUPERFAMILY Cyclophilin-like 466 618 IPR029000 -
Glsi04g0475 621 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 464 618 IPR002130 GO:0000413|GO:0003755
Glsi04g0475 621 CDD cyclophilin_WD40 469 616 - -
Glsi04g0475 621 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 468 618 IPR002130 GO:0000413|GO:0003755
Glsi04g0475 621 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 502 519 IPR020892 GO:0003755|GO:0006457
Glsi04g0475 621 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 463 617 IPR044666 -
Glsi04g0475 621 FunFam Peptidylprolyl isomerase domain and WD-repeat protein 1 53 316 - -
Glsi04g0475 621 SUPERFAMILY WD40 repeat-like 57 287 IPR036322 GO:0005515
Glsi04g0475 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 507 519 IPR002130 GO:0000413|GO:0003755
Glsi04g0475 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 578 593 IPR002130 GO:0000413|GO:0003755
Glsi04g0475 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 481 496 IPR002130 GO:0000413|GO:0003755
Glsi04g0475 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 565 577 IPR002130 GO:0000413|GO:0003755
Glsi04g0475 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 550 565 IPR002130 GO:0000413|GO:0003755
Glsi04g0475 621 FunFam Peptidylprolyl isomerase domain and WD repeat-containing 1 449 619 - -
Glsi04g0475 621 Gene3D - 457 621 IPR029000 -
Glsi04g0475 621 Gene3D - 46 442 IPR015943 GO:0005515
Glsi04g0475 621 MobiDBLite consensus disorder prediction 1 35 - -
Glsi04g0475 621 SMART WD40_4 92 131 IPR001680 GO:0005515
Glsi04g0475 621 SMART WD40_4 50 87 IPR001680 GO:0005515
Glsi04g0475 621 SMART WD40_4 182 221 IPR001680 GO:0005515
Glsi04g0475 621 SMART WD40_4 238 277 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0475 Glsi-ChrGlsi04 3182949 3189853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0475 468 618 U-box Gene Family AT5G67530 47.682 6.16e-42 158