Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0474 ATGAGGACACTGTACAATAAAGGAGGTAGCCTTTTTAATTTACGATTTTGCCACTGTTCTCAACTCCTCGCCTCAAACGCCCCATTTCTTGTTCCTGCCTCGGGAATCCAATACCTGTCTCGCAGAACCTCCACTCCTCCTGCAATTTCCTGCAACCATCGTCTCTTTTCTCCTTCTGGGTCGTTGATTAGAGCATCGATGGCGTCTATGACCTCATCCACTGGCACTGAGACGGAGACAAAGCCATTCGCTGTGCTCTTTGTGTGTCTAGGCAACATCTGCAGAAGCCCGGCTGCTGAAGGGGTCTTCAGAGACTTGGTCAAGAGAAGGGCTTTAGATTCCAAGTTCAAAATTGATTCTGCTGGCACCATCGGTTACCATGAGGGAAATGAGGCAGACCCGAGAATGAGAGCGGCCTCAAAAAGGCGAGGAATTGAGATAACCTCTATTTCTAGGCCAATCCGGCCATCTGATTTCAGAGATTTCGATCTTATTCTTGCTATGGACAAGCAAAATAGAGAGGACATATTGGAAGCTTTCAATAGATGGAAATTTAGAGATACTTTACCAGCTGATGCACATAAAAAGGTTAAATTGATGTGCTCGTATTGTAAGAAACATGATGAAACTGAAGTCCCAGATCCTTACTATGGTGGATCTCAAGGCTTTGAAAAGGTGTTAGATTTGCTTGAAGATGCTTGTGAATCATTGTTGGACAACATTTTGGCAGAGCATAAACATTTGCAAGAATGA 753 0.4422 MRTLYNKGGSLFNLRFCHCSQLLASNAPFLVPASGIQYLSRRTSTPPAISCNHRLFSPSGSLIRASMASMTSSTGTETETKPFAVLFVCLGNICRSPAAEGVFRDLVKRRALDSKFKIDSAGTIGYHEGNEADPRMRAASKRRGIEITSISRPIRPSDFRDFDLILAMDKQNREDILEAFNRWKFRDTLPADAHKKVKLMCSYCKKHDETEVPDPYYGGSQGFEKVLDLLEDACESLLDNILAEHKHLQE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0474 250 SMART LMWPc_2 83 240 IPR023485 -
Glsi04g0474 250 PRINTS LMW phosphotyrosine protein phosphatase signature 128 144 IPR017867 GO:0004725|GO:0006470
Glsi04g0474 250 PRINTS LMW phosphotyrosine protein phosphatase signature 212 227 IPR017867 GO:0004725|GO:0006470
Glsi04g0474 250 PRINTS LMW phosphotyrosine protein phosphatase signature 85 102 IPR017867 GO:0004725|GO:0006470
Glsi04g0474 250 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 51 246 - -
Glsi04g0474 250 CDD LMWPTP 85 239 - -
Glsi04g0474 250 Gene3D - 65 246 - -
Glsi04g0474 250 SUPERFAMILY Phosphotyrosine protein phosphatases I 81 241 IPR036196 -
Glsi04g0474 250 FunFam Low molecular weight protein-tyrosine-phosphatase 82 246 - -
Glsi04g0474 250 Pfam Low molecular weight phosphotyrosine protein phosphatase 85 238 IPR023485 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0474 Glsi-ChrGlsi04 3180274 3182060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0474 47 244 Protein tyrosine phosphatase (PTP) family AT3G44620 64.253 3.71e-94 275