LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g0468	ATGGACTTTGAGAATGGATCTTCTTCTTCACCGAACCCTAGTTCTTCCTCAGATTCATCATCACAGGCGCCACGAATAACATCTCACAAGAGGAAAGCAGGGAGAAAGAAGTTCCAGGAGACTCGCCACCCGCTCTATAGGGGTGTACGCAGAAAAAACGGAAACAAATGGGTTTGTGAAATCCGGGAACCAAACAAACCCTCAAGGATTTGGCTTGGGACTTACCCTACTCCTGAAATGGCCGCTAGGGCACATGATGTGGCTGCCCTAGCCCTCCGAGGCAGCTCAGCCCTTCTCAATTTTCCCAACTCGGCTTTGCTTCTTCCAGCTTCAGGCTCATCTTCAGTTGAAGATATCAGAGCAGCTGCAGCTAAAGCTGCTAAGGCTTTTAGACCAATAATTACCTCTTCCTCCTCTCATGATCTGGAGACAAAGTGTGAAAACATTACAAACCAGTGTTCAGTAGAGGGCTCATCGCCGTCGTCGTCAAAGGATGTTCTTGTTAGAAGCCTTGAGGAAAAGTATAATGATGATGAGTGTAGAACGTTGTTCTTGGATGAGGAGGCCTTGTATAATATGCCAGGTCTGTTAGATAGTATGGCGGAGGGTTTGCTTCTTAGCCCTCCATCTATGAAGATATCAGCTTCGGATTGGGATGATATTAATACCTGTGAAATAGACTTGACTTTATGGACGCACTAA	702	0.4615	MDFENGSSSSPNPSSSSDSSSQAPRITSHKRKAGRKKFQETRHPLYRGVRRKNGNKWVCEIREPNKPSRIWLGTYPTPEMAARAHDVAALALRGSSALLNFPNSALLLPASGSSSVEDIRAAAAKAAKAFRPIITSSSSHDLETKCENITNQCSVEGSSPSSSKDVLVRSLEEKYNDDECRTLFLDEEALYNMPGLLDSMAEGLLLSPPSMKISASDWDDINTCEIDLTLWTH	233

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g0468	233	SMART	rav1_2	45	108	IPR001471	GO:0003700\|GO:0006355
	Glsi04g0468	233	ProSiteProfiles	AP2/ERF domain profile.	45	102	IPR001471	GO:0003700\|GO:0006355
	Glsi04g0468	233	Gene3D	AP2/ERF domain	45	103	IPR036955	GO:0003700\|GO:0006355
	Glsi04g0468	233	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	8	232	IPR045277	GO:0003700
	Glsi04g0468	233	MobiDBLite	consensus disorder prediction	1	27	-	-
	Glsi04g0468	233	MobiDBLite	consensus disorder prediction	1	45	-	-
	Glsi04g0468	233	CDD	AP2	44	104	IPR001471	GO:0003700\|GO:0006355
	Glsi04g0468	233	PRINTS	Ethylene responsive element binding protein signature	46	57	IPR001471	GO:0003700\|GO:0006355
	Glsi04g0468	233	PRINTS	Ethylene responsive element binding protein signature	68	84	IPR001471	GO:0003700\|GO:0006355
	Glsi04g0468	233	FunFam	Ethylene-responsive transcription factor 2	44	103	-	-
	Glsi04g0468	233	Pfam	AP2 domain	44	94	IPR001471	GO:0003700\|GO:0006355
	Glsi04g0468	233	SUPERFAMILY	DNA-binding domain	45	104	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g0468	Glsi-ChrGlsi04	3146769	3147470	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g0468	14	232	AP2-EREBP Transcription Factor Family	AT5G51990	44.889	4.16e-59	184

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Glsi04g0468		AP2	1.7e-13	CL0081