Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0461 ATGCAGGCTCTCTCTCCCCACCCCTCCAATTCTCTCCAATCCCTCTTCCACACTCGTCCGTCTTCCATCCGGGTCTCTCCTACCCGAATTGTTCTCAAATGCGCTTACGGCTTCGAATCCGCCGGCTTCTCCCACGGACACGGCTCCCGAGCAGACTGGCAGAGCTCCTGCGCCATCTTAACTAGTAAGGTTCACTCCCAGGAGAAGGCCTCCGCCGACAAGAACGGTGGCACCGCCGACCATGTCGCCGCCGTCAACGGCCACAAGGCCTCTTTAACCGATCTCAGCCTTGTCCCCATCGGTAACCTTGAACGCAGCGACAACAACAAGCCTGTTCAACCCAAGCCCCTTACCATTTCGGACCTCTCCCCCGCTCCAATGCACGGCTCACAGCTGCGCGTCGCTTACCAGGGCGTTCCTGGAGCATACTCGGAAGCGGCTGCCGCCAAGGCTTATCCGAACTGCGAAGCAATTCCTTGCGACCAATTCGAGGTGGCTTTCCAAGCAGTCCAGCTCTGGATCGCCGATCGAGCTGTTCTCCCCGTGGAAAACTCCCTGGGCGGTTCGATCCACCGGAATTACGACCTCCTCCTCCGTCACCAGCTCCACATAGTTGGCGAGGTCCAATTCCCAGTCCATCACTGCCTCCTAGCACTCCCCGGAGTCCGGAAAGAGTACCTAAACCGCGTCATCTCGCATCCACAAGCCCTTGCGCAGTGCGAGCACACACTGACCAAACTCGGCCTCAACGTCGCCCGTGAGGCCGTGGACGACACCGCCGGCGCAGCGGAATTCGTCGCCACCAACAACCTGCGCGACACGGGGGCAATCGCGAGCGCACGCGCGGCGGAGCTCTACGGTTTGCAGATATTGGCTGATGGGATCCAGGACGACCCGAGCAACGTGACCCGATTCATGATGCTGGCCCGAGAACCAATAATTCCGCGTACGGACAGGCCATTCAAGACGAGCATAGTGTTCGCGCACGATAAGGGGACCTCGGTGCTGTTCAAGGTGCTTTCGGCGTTCGCATTCAGGGACATTAGCTTGACAAAGATCGAGTCCAGGCCACACCGGGGCCGTCCGATTAGGCTGGTGGACGATGAGAATACGGGGACCGCAAAGCATTTCGAGTATATGTTCTACGTTGATTTTGAAGCTTCGCTGGCGGAAGTTAGAGCCCAGAATGCCTTAGCAGAGGTTCAGGAGTTCACCTCTTTCTTGAGGGTGTTGGGGAGCTATCCTATGGACATGACGCCTTGGACCCCCTCCCCTTGCCCTTAG 1284 0.5857 MQALSPHPSNSLQSLFHTRPSSIRVSPTRIVLKCAYGFESAGFSHGHGSRADWQSSCAILTSKVHSQEKASADKNGGTADHVAAVNGHKASLTDLSLVPIGNLERSDNNKPVQPKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAAKAYPNCEAIPCDQFEVAFQAVQLWIADRAVLPVENSLGGSIHRNYDLLLRHQLHIVGEVQFPVHHCLLALPGVRKEYLNRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVATNNLRDTGAIASARAAELYGLQILADGIQDDPSNVTRFMMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRDISLTKIESRPHRGRPIRLVDDENTGTAKHFEYMFYVDFEASLAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSPCP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0461 427 CDD PBP2_Ct-PDT_like 133 312 - -
Glsi04g0461 427 ProSitePatterns Prephenate dehydratase signature 1. 286 308 IPR018528 GO:0004664|GO:0009094
Glsi04g0461 427 ProSitePatterns Prephenate dehydratase signature 2. 350 357 IPR018528 GO:0004664|GO:0009094
Glsi04g0461 427 SUPERFAMILY Periplasmic binding protein-like II 133 316 - -
Glsi04g0461 427 Gene3D - 128 216 - -
Glsi04g0461 427 Gene3D - 317 418 - -
Glsi04g0461 427 Gene3D - 217 298 - -
Glsi04g0461 427 ProSiteProfiles Prephenate dehydratase domain profile. 133 310 IPR001086 GO:0004664|GO:0009094
Glsi04g0461 427 SUPERFAMILY ACT-like 305 417 IPR045865 -
Glsi04g0461 427 CDD ACT_CM-PDT 322 415 - -
Glsi04g0461 427 ProSiteProfiles ACT domain profile. 324 415 IPR002912 -
Glsi04g0461 427 FunFam Arogenate dehydratase 317 418 - -
Glsi04g0461 427 FunFam Arogenate dehydratase 216 298 - -
Glsi04g0461 427 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 35 423 - -
Glsi04g0461 427 FunFam Arogenate dehydratase 128 215 - -
Glsi04g0461 427 Pfam Prephenate dehydratase 134 312 IPR001086 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0461 Glsi-ChrGlsi04 3098190 3099473 Dispersed/Wgd