Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0456 ATGGAGTTTTGGGGTGTTGAGGTCAAGGCTGGGGAGCCTGTTGAGATAAATCCAGATGATTTGGGTAAATGCATACATCTTTCTCAGGCTGCTCTTGGGGAGGGAAAGAAAGATAAAGCAAGCGAACATGTGGCCCTTTATATAAATATTGGCGACCAGAAGCTTGTTTTGGGAAACCTTTCACATGAGAAATTCCCTCAATTATCTTTTGATTTGGTTTTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAACAGTGAAGATGATGAGGATCTCCCTTTGATGGCCAAAGATAATGCGAAACCTGATATAAAGCCTGAAGTAGCTAAGGCTGCTACCTCTAAAAGTAATGATGTCAAGTTTGGTGAATCAAAAAAGCAAGTCAAGGTTGTTGGTCCAAAGAAAGATGAAGACGTGGAATCTGAAGATGAAGAAGATGATGAATCTGAAGATGAAGAAGATGATGAAAATGGTAGTTCTGACGAGGATTTGATGGATGGTGATGGTGATGGTGATAGTGATGAAGATGAAGACGAGACCCCTCCTAAGAAGGCTGATCAAGCTAAGAAGAGACCTAATGATTCTGTATCAAAAACTCCTGTTCCTGCCAAGAAAGCTAAATCTGCTATTCCTCAAATGGCAGATGGTAAGAAAGGTGGTCATATAGGAACTCCTTATCCTCTAAAACAGGGTGGAAAGACTACTAAAAGTGAAGCCAAGGATAAGGATAAGACTCCTAAATCTGGTGGACAGTTCTCCTGCAAATCTTGCAGCAAGTCCTTCACCTCAGAAGGTGGTCTGCAACAACATTCAAAGGCTAAGCATGGTGGTCCGTGA 846 0.4137 MEFWGVEVKAGEPVEINPDDLGKCIHLSQAALGEGKKDKASEHVALYINIGDQKLVLGNLSHEKFPQLSFDLVLEKKFELSHNWKNGNSEDDEDLPLMAKDNAKPDIKPEVAKAATSKSNDVKFGESKKQVKVVGPKKDEDVESEDEEDDESEDEEDDENGSSDEDLMDGDGDGDSDEDEDETPPKKADQAKKRPNDSVSKTPVPAKKAKSAIPQMADGKKGGHIGTPYPLKQGGKTTKSEAKDKDKTPKSGGQFSCKSCSKSFTSEGGLQQHSKAKHGGP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0456 281 Pfam Nucleoplasmin-like domain 3 84 IPR041232 -
Glsi04g0456 281 MobiDBLite consensus disorder prediction 83 108 - -
Glsi04g0456 281 MobiDBLite consensus disorder prediction 252 272 - -
Glsi04g0456 281 Gene3D Nucleoplasmin core domain 1 90 - -
Glsi04g0456 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 281 IPR013087 -
Glsi04g0456 281 MobiDBLite consensus disorder prediction 237 251 - -
Glsi04g0456 281 FunFam Histone deacetylase HDT1 1 89 - -
Glsi04g0456 281 MobiDBLite consensus disorder prediction 141 180 - -
Glsi04g0456 281 SMART c2h2final6 255 278 IPR013087 -
Glsi04g0456 281 ProSitePatterns Zinc finger C2H2 type domain signature. 257 278 IPR013087 -
Glsi04g0456 281 Gene3D Classic Zinc Finger 253 279 - -
Glsi04g0456 281 MobiDBLite consensus disorder prediction 122 140 - -
Glsi04g0456 281 MobiDBLite consensus disorder prediction 181 196 - -
Glsi04g0456 281 MobiDBLite consensus disorder prediction 83 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0456 Glsi-ChrGlsi04 3065551 3068370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0456 1 274 C2H2 Transcription Factor Family AT3G44750 37.276 1.24e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0456 NPL 9.4e-10 CL0055