Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0450 ATGGAGATGGCGGGAAGCCCGAAGGCATGGCATTGCCTACTTCTCATGCGCACTCCCGCCATAAAACTGGCAAGCCTCTTTGCTCGCCTGGTTATCTCATACTTAGCCTCAACCCTTGGCGCCCTTCAATTGCCAGGAACTCTTGAAATCAGCTTAGGGTTAGGGTTAGGGCTCTGCAAGATGGGAAAGAATAAGATTACAGACGAACAATTATCCACCGTCCGATCCATCGTTGGTTCCGAATATACTGACATGGACATTATAAGAGCCCTACACTTGGCCAACAACGATGCCACCGCTGCCATTAACATTATTTTTGACGATCCCAATTTCAAATTTAAAGAGAGGTTTGGCCTAGGCACTCCCAGAAATCCCCAAGTTTCTCATCGAAGTTCAGCCTCTGATGCTGGAACTAAAGGTGGAAGTGTCATCGCGAACTCCAAGCCAATTGGTGCTGAGGACAAAAATGGCTCTTTTGGGGTGGAAGCTAATGTTACCTCTGATTCTGGAACTGGAGGTGGAAGCGTCATCGCGAGCTCCAACCAAATTGGTCCAGAGGACAAGAATGACTCTTTGGGGTTGGAAGCAAATGTTGCTGACTCTGCTTCTAACTTGGGTGGTTGTACCGTTGAGGATGCTGGAGGGCGTCCCAGTTCAGCCGGAAGTGATTGGTGGCTCGTGGGTTGTGGTGAAATGACAGGTTTATCGACTTGTAAAGGGAGAACTATCAATCCTGGTGATCAAGTGTTTTTCAAGTTTCCTTTGAAGACAGGTTCTACTACGCCGTCCCCAGGTAAGGGGTTTGGCCGGGGTCGACAGGCAGCAGCAACGTGTTCAGAGATAGTGCGATTCTCTACCAAAGACTCCGGAGAGATTGGTAGAATACCAAATGAATGGGCTCGATGTCTCTTGCCCCTTTTACGGGATAAGAAGGTTAGGATCGAGGGGCATTGTAAATTTGCTCCTACTAATTTGGGCATTATGGATACCATTCTTTTATCTATCAGTGTATTTGTCAAAAGTTCAATGTTTCGAAAGCATCACCAGGTTTCTCTTAAGGATGCCACTAATTCCACTGATGAATCAGTGTTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGTTTGAGTCCCTTTAAAAAGGCAGAGTTTACTCCTGGTGACTTGTATTCAAAGAAGCGGCCTTTTAATGAAAAGATTTCTTCTCTTCAGGCCACATTACTGCACTTTAAATGCAAGCATCCTTCTGCAAATGGTAATGAGATTGACAACGAGGATTCAATGTCTGAAATTGATCTTGACAACATTGTTGGTGTTGGAGCCAGCTCGGAGTTAGAGGAAATGGATCCCCCAGGTACTCTTCAGTGTGAATTGCGGCCTTATCAAAAGCAAGCTCTTAATTGGATGATCCAGCTGGAGAAGGGACGACCTATGGACGAGGCAGCAACAACCCTTCATCCATGTTGGGAGGCATATCACCTGGCAGACAAGAGGGAGCTTGTTATTTATTTGAATGCTTTTTCTGGTGAAGCTACTATAGAATTTCCCAGCACACTTCAAATGGCTAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAAACCATTATGACCATAGCCCTCCTTCTTGCCCATTCAGGAAGGGGTGGATCATCAGGTAGTCAACCCATGGCTCTGCCCTTCACTGAAGGTGGTGAAGTTAATGACGCACATAAAAACTCTTCAAACAAACCAAACAAGGCAACGAAGTTGTCAGGTTTTGATAAACTGATGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAATCTGATAGTATGTCCCATGACTCTTCTAGGGCAGTGGAAGGCAGAGATTGAATCTCATGTTCAGCCTGGGTCTCTATCATTATATGTTCATTATGGACAAAGCAGACCAAAAGATGCAAAAACTCTATCTCAGAATGATGTTGTAATTACTACATATGGAGTCTTAGCTTCTGAATTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTTCTTTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAGGCACATACTATAAAATCTTCCAAAAGCCAAATTTCGATAGCAGCTACTGCTTTAGTTGCTGACAGACGTTGGTGTCTTACTGGCACTCCTATTCAGAACAACCTTGAGGATATTTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTCATTCAGAAGCCATTTGAGGAAGGTGATGAGAGAGGGTTGAAGCTGGTTCAATCCATCTTGAAGCCCATCATGCTGAGGAGAACCAAAAATAGCACAGATCGAGAGGGCAAACCTATACTAGTTCTCCCTCCAGCTGATGTGCAGATGATTTACTGTGAACTCACTGAAGTTGAAAAGGACTTTTATGAGGCACTATTCAAAAGATCTAAGGTCAAGTTTGATCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCTATATTGGAGTTGCTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGGGATACTCAAGAATTTGCCGATCTAAACAAACTAGCTAAGCATTTCCTCAAAGGAACTCATAATGGTTCAGAAGGGGAAGTAAAAGATGCACCTTCAAGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAGGGGGAACAGGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCACCGCTTATGCCGAGAATGCCTTTTGGCAACTTGGAGAAACTCTAACTCTGGTTTATGTCCTGTTTGTAGGAAAACAATCAGCAGGCAGGATCTTTTAACTGCCCCCACTGAGAGTCGATTTCAGATTGATATTGAGAAGAACTGGGCGGAGTCATGCAAGGTAACTGTCCTTTTGCATGAACTTGAAAATCTTCGCTCATCAGGCTCTAAGAGCATTGTCTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTAGGAGTAACATTCCATTTGTTCGTCTTGATGGGACTTTGAATCAGCAGCAGCGTGAGAAAGTAATTAAACAATTCTCAGAAGACAGTGATATCCTGGTGTTATTAATGTCTCTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCAGCTTCAAATGCTTTTGTTATGGATCCATGGTGGAATCCAGCTGTAGAGGAGCAAGCTGTTATGCGTATTCACCGTATTGGACAAACAAAGAATGTGAGCATCAAACGGTTTATTGTGAAGGGAACAGTTGAGGAAAGAATGGAAGCAGTGCAAGCACGTAAACAGCGAATGATTTCTGGTGCCTTAACTGATCAAGAAGTTCGAACTGCACGAATTGAAGAGCTGAAGATGCTTTTTACTTAGCATGTCAAGTCTAGTGGAGGTTTTGATCGCCTGGCTTTCATGCTTGAATCAGATTATTTGAAGGGGGAGATCTTCTTCTGGCGCCTTTTACACAGTGCTGCGCGTTTAAACTCCTCTATTGTCACCTTCGTCTTCTTCCATAAGTCAAGACAGAAAGCTAAGCCTCTCTCTTTCTCTCTGGGTTTCCATTGCTACCTAAAGCTGATACCTTTTCTTGGGGATATTCTCAAAGGGGTATCTTTCATGGAGGACCAAAATTGTACGGTCACTCTGTCTCCGAACTCCAAGCAGACCGAGCCACCTATGAGCCTGGTGTTGGAGCAGGAAAAGACGGACACGGGCACCGTGCCGGTTGTAATGGGAAGAGTCGGAGTCGAGTCTGCCTTGAACTCCGACGTCGGAGGAAAATCTGAGGCTGTCGGTTCGGAAGTGGAGGTGAAGAGGGGAAGGGGAAGGGGAAGGCCTCGGAAGTACGATATTAATGGAAACCTGCTGTCCCCGGCGTCAGCGCCGTCAGGCTTTTCGACTTACCCGTTTGGAAGCTCTGGTAAGCGAGGCAGAGGACGACCCCGTGGTTCCGGAAAATTGCAGCTTTTGGCTTCCATGGGTGGATTTGTTGCAGACACAGCAGGGGGAAGCCTCACCCCTCATGTAATGACTGTGAATACTGGGGAGGATGTGGTTAGTAAAATGTTATTATTTTCTCAAAGCCGCCCTCGGGCTGTCTGCATACTCTCTGCTACTGGTGCTGTATCCAATGTCATCATTCGTCAACCTAATTCTGGTGGTATTTTGAGATACGAGGGTCGCTTTGATATAATATCTTTATCTGGATCTTTTACCTACGGTGGCGTTGGTAGTGCTCATCGCAAAACTGGTATCATGAGCGTGTCGCTGGCTAAACCTGATGGAAAGGTTTTTGGAGGCTGTGTCGAGGGTTCAATGATAGCTGCTGGCCCTATTCAACTAATTGCGGGCAGTTTTAAGCAAAACATCAGTAGAGAAATCAAAAGAATCTCTGATGGATCTCCTAGTGCTGCCAATATACCTGGTAATCCAGATTCAGCAAGGGTTCCTAAAATGATAGAAGGCGAACAGAGTTTCCCTTCACCAACATCTGGACTAATGCCAACAAGTAATGGATTACCGGATAATGTAATGCCTGGAACATCTAATGGATTACCGGATAATGTCACTTCTGCAACAACAAATGGGGTACCAGATAGTTTCTATTCTGCGAATCAGAATATGCACTCAGTCTCTTTCAACGGTGTTGGCCTGGACCAAATAACATTTGCTGATGTTGATAACAGTGTCCCTCACATGTAA 4752 0.4491 MEMAGSPKAWHCLLLMRTPAIKLASLFARLVISYLASTLGALQLPGTLEISLGLGLGLCKMGKNKITDEQLSTVRSIVGSEYTDMDIIRALHLANNDATAAINIIFDDPNFKFKERFGLGTPRNPQVSHRSSASDAGTKGGSVIANSKPIGAEDKNGSFGVEANVTSDSGTGGGSVIASSNQIGPEDKNDSLGLEANVADSASNLGGCTVEDAGGRPSSAGSDWWLVGCGEMTGLSTCKGRTINPGDQVFFKFPLKTGSTTPSPGKGFGRGRQAAATCSEIVRFSTKDSGEIGRIPNEWARCLLPLLRDKKVRIEGHCKFAPTNLGIMDTILLSISVFVKSSMFRKHHQVSLKDATNSTDESVFHPLPTLFRLLGLSPFKKAEFTPGDLYSKKRPFNEKISSLQATLLHFKCKHPSANGNEIDNEDSMSEIDLDNIVGVGASSELEEMDPPGTLQCELRPYQKQALNWMIQLEKGRPMDEAATTLHPCWEAYHLADKRELVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTIALLLAHSGRGGSSGSQPMALPFTEGGEVNDAHKNSSNKPNKATKLSGFDKLMKQKNALTSGGNLIVCPMTLLGQWKAEIESHVQPGSLSLYVHYGQSRPKDAKTLSQNDVVITTYGVLASEFSSENAEDNGGLLSIRWFRVVLDEAHTIKSSKSQISIAATALVADRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEEGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADVQMIYCELTEVEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKHFLKGTHNGSEGEVKDAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLATWRNSNSGLCPVCRKTISRQDLLTAPTESRFQIDIEKNWAESCKVTVLLHELENLRSSGSKSIVFSQWTAFLDLLQIPFTRSNIPFVRLDGTLNQQQREKVIKQFSEDSDILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKNVSIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFTXHVKSSGGFDRLAFMLESDYLKGEIFFWRLLHSAARLNSSIVTFVFFHKSRQKAKPLSFSLGFHCYLKLIPFLGDILKGVSFMEDQNCTVTLSPNSKQTEPPMSLVLEQEKTDTGTVPVVMGRVGVESALNSDVGGKSEAVGSEVEVKRGRGRGRPRKYDINGNLLSPASAPSGFSTYPFGSSGKRGRGRPRGSGKLQLLASMGGFVADTAGGSLTPHVMTVNTGEDVVSKMLLFSQSRPRAVCILSATGAVSNVIIRQPNSGGILRYEGRFDIISLSGSFTYGGVGSAHRKTGIMSVSLAKPDGKVFGGCVEGSMIAAGPIQLIAGSFKQNISREIKRISDGSPSAANIPGNPDSARVPKMIEGEQSFPSPTSGLMPTSNGLPDNVMPGTSNGLPDNVTSATTNGVPDSFYSANQNMHSVSFNGVGLDQITFADVDNSVPHM 1583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 117 192 - -
Glsi04g0450 1583 Pfam Zinc finger, C3HC4 type (RING finger) 902 950 - -
Glsi04g0450 1583 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 218 1140 - -
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 554 584 - -
Glsi04g0450 1583 FunFam DNA repair protein RAD5B 513 772 - -
Glsi04g0450 1583 SUPERFAMILY RING/U-box 893 951 - -
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 1507 1542 - -
Glsi04g0450 1583 ProSiteProfiles PPC domain profile profile. 1352 1490 IPR005175 -
Glsi04g0450 1583 Pfam Helicase conserved C-terminal domain 977 1087 IPR001650 -
Glsi04g0450 1583 SMART helicmild6 1004 1087 IPR001650 -
Glsi04g0450 1583 SMART ring_2 905 944 IPR001841 -
Glsi04g0450 1583 Pfam HIRAN domain 228 335 IPR014905 GO:0003676|GO:0008270|GO:0016818
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 1505 1542 - -
Glsi04g0450 1583 SMART ultradead3 454 752 IPR014001 -
Glsi04g0450 1583 SMART AT_hook_2 1290 1302 IPR017956 GO:0003677
Glsi04g0450 1583 SMART AT_hook_2 1325 1337 IPR017956 GO:0003677
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 1316 1336 - -
Glsi04g0450 1583 Pfam SNF2-related domain 461 849 IPR000330 GO:0005524|GO:0140658
Glsi04g0450 1583 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 516 733 IPR014001 -
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 124 141 - -
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 569 583 - -
Glsi04g0450 1583 CDD SF2_C_SNF 973 1098 - -
Glsi04g0450 1583 ProSiteProfiles Zinc finger RING-type profile. 905 945 IPR001841 -
Glsi04g0450 1583 Pfam Plants and Prokaryotes Conserved (PCC) domain 1357 1470 IPR005175 -
Glsi04g0450 1583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 783 1179 IPR027417 -
Glsi04g0450 1583 SUPERFAMILY AF0104/ALDC/Ptd012-like 1354 1472 - -
Glsi04g0450 1583 Gene3D - 1357 1483 - -
Glsi04g0450 1583 Gene3D - 516 783 IPR038718 -
Glsi04g0450 1583 ProSitePatterns Zinc finger RING-type signature. 920 929 IPR017907 -
Glsi04g0450 1583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 865 966 IPR013083 -
Glsi04g0450 1583 SMART HIRAN_2 227 339 IPR014905 GO:0003676|GO:0008270|GO:0016818
Glsi04g0450 1583 CDD DEXDc_SHPRH-like 458 771 - -
Glsi04g0450 1583 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 975 1135 IPR001650 -
Glsi04g0450 1583 MobiDBLite consensus disorder prediction 160 187 - -
Glsi04g0450 1583 CDD DUF296 1356 1469 IPR005175 -
Glsi04g0450 1583 Gene3D - 787 1147 IPR027417 -
Glsi04g0450 1583 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 771 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0450 Glsi-ChrGlsi04 3012046 3029412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0450 65 1140 RAD5 or RAD16-like Gene Family AT5G22750 69.963 0.0 1529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi04g0450 SNF2_N 6.1e-88 CL0023