Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0449 ATGGAACCCCCAGTTGTCAGATCGAGGGGCCGGCCGAGGAAACGGAGGAGAAAAGAAGATGAAAATGGGACCGATGATAGGAGATCGGCTCCCGATTTGAAAAGGCAAGCTCCCGGGACAAGATCAATAGCACTGGTTGGACGATACGTACTTAAAGAGTTCAAGGGAAGTGGGGTTTTTCTTGGGAAAGTTGTGTATTACGAGTATGGGTTATACAGAGTCAGTTACGAGGATGGTGATTTTGAGGATTTGGATAGCAGCGAGATTCGTGGAATACTTCTTAACGACAGTGATTTTGATGATGGTTTGATTCAAAGGAAGAATATATTGGATGATTCGGTGTTGAAGAATAGGGCAAAGATAACAGATGGTTCGGAGAAGAGTTCTGCTGACCCAAACAAAGATGTTTGCGATGATGAGGCACCTGTATCGAGTGAATTGCCTGGTGGCCCATCGATTGAACACAACAGGGTCGAAGTTGAGGAGGATCCTGATTCATCAAGTGACTCATTTGCAGGCTCAAAAGAAAGGGATTGGGGGTCTGACACCGATACCCCATCTCTACCACCGTTGCAGTTGCCACCGTCTTCAGGAACTATTGGTGTGCCCGAGCCATATGTCTCTCATCTTTTTGCAGTTTATGGATTTCTACGGTCGTTCAGTACTCGCCTGTTTTTAAGTCCGTTTTCTTTGGATGAGTTTGTTGGCTCTCTTAACTGCAGAGTTTCAAACACTTTGATTGATGCCGTTCATGTTTCCCTGATGCGTGTTTTGAGACGTCATCTTGAAGCCCTTTCATCCGAAGGGTCAGAGCATGCATCAAAATGCCTGAGGTGCAACGATTGGGGCTTGCTTGATACATTGACTTGGCCTGTTTTTGTGATTCAGTATCTAGCAGTTAATGGATACACAGAAGGACCGGAGTGGAAAGGATTTTATGATGAGGTTTTTAATGGTGAGTATTATTTATTGCCTGTAGCTAGGAAGTTAATCATTCTGCAAATTCTCTGCGACGATGTTTTGGAGTCTGAGGAGCTGAAGGCTGAAATGATCAATCGTGAAGAATTGGAAGTTGGGATGGAGTACGATGCAGAAGATATCCTTCCAGCAGAAAATTGGCCAAGAAGAGTCCATCCAAGAAATGCCAAAACCTCTGCTTGCAAGGATAAAGAAGCTACGAAGTTTGTTTCAGAACCAAATTGCTTGAAGTTACCTGGTAACTCTGTTTTAGATTTCAGAGATACTGAAAGGACTGAGGATGCTGATGTAGATAGAAATGGAGATGAATGCCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCCTCTGCATATCACTCAAGGTGTATTGGAGTGATGAAAATGTTTATACCAGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTGATATGACTGGGCCAACAATTGTAAAGGGAACATCACTTAGGGGGGCTGAACTATTTGGAATGGATCTGTATGGACAACTCTTCATGGGTACTTGCAACCACCTACTGGTGCTCACTATCAACTGTGAACTTTGTCTCAGATATTACAACCGGAATGACATTTCAAAAGTTCTTCAAGTGCTTTATGCATCTGTAGAGCATAGACCTTTATACTATGGAATTATCATGGCAGTATCACAATATTGGAATATTTCAGAAAGTATCTTGCCTGTTGCTGTTGCAACTGGAACGCATCACCTTTTGCTTGAACTTGAGGAAAACATTCGCTTAATTTCTTTTACTGGTGATTGGTTTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTATGATTCAAAGTGCTGCAAGTTCTGTTGGAACAATTCAGACACGTGTGCTGAGTGGGAGGCGTTACAAGAAACAGTTAGCTGTTGGTGAAGTTACAGTTGATGGTTGCCATGAAAACAACTTTGCCTGGTGGCATGGTGGTAAATTCACCAAGTTTATATTTCAGAAAGCAGTTCTGCCAAAATCTATGGTCAGAAAAGCAGCTCGCCAAGGTGGGTTGAGGAAAATTTCTGGTATTTCCTACGCTGATGGCTCTGAAATTCCTAAAAGAAGCAGGCAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTCAGATACCTAGATTTTCATCTTCGATGGAGTGATTTGATTTGTCCTGAGCAAATCCTCCAGGATGGGAAAGGTCAAGAGACTGAATCATCTGCTTTTAGAAATGCTAATATATGTGATAAAAAAGAAGTTGAGGGCAAAATTTTTTATGGAATTGCTTTTGGGAACCAAAAGCATCTTCCTTCTCGTATTATGAAAAATGTTACTGAAATAGAGCAAGCTCCAGAAGGAAAGGAAAAGTATTGGTTTTCTGAAGCACGGGTTCCTTTGTATCTGATAAAAGAGTATGAAGAAGTTATAGAAAAAGTGCCATCTCAGAAAGAGTACTTGAATTTGGAATCTCAGTTGCAAAGAAGGCGGTTGAAAGCTATGTGCAAGGATATATTTTTTTACCTCACCTGTAAAAGAGACAACTTGGATATGTTCTCATGTTCTGTATGTCAGCTGGGTGTTTTAATTGGGAATGCTTTCAAGTGCAGTGCATGTCAAGGTTATTGTCATCAGGGCTGTTCTTTAAGTTCAACATTCTCAAAAAATGAGGAAGTTGAGTTCTTAACCACATGCAAGCAATGTTATCATACCAAATTGCTTGCTCAAAAAGAGACCAGGAATGAATCTCCAACAAGTCCCTTACTCTTACAAGGACAAGAACATAGCTCTCTGACAGTTTTGAAGGGACCAAGACCTAAATGTAATGATCAAGCATTGGCATCTGCCGGGAAAAAGGATACTCGTCCGGACGTGAAACAAGGTGCTTCTGATTCCACTTTGCCAACAAAAAGCCGTCGCAGGAATTGTTCTTGGGGTATTATATGGAAAAAGAAGAATATTGATAATACAGGCATTGATTTCAGGCTTAAGAACATACTTTTAAAGGGAGGTTCAGGTGCACCTCAATTGGAGCCTGTTTGTCACCTGTGCCGTAAGCCATATAGGTCTGATCTGATGTATATTTGCTGTGAGACATGCAAAAATTGGTATCACGCTGAAGCTGTTGAACTTGAAGAGTCAAAAATTTTTGATGTGTTTGGCTTCAAATGTTGCAAGTGTCGCAGGATTAAATCGCCTGTGTGTCCTTACTCTGATTCGAAGCAGAAGATGCAGGAGGGTACTAAGACACACCCAAAAACTTCAAAGAAAGATCAGTCTGGAATGATGTCTGAATTGAAAGAGTGTGAGTCTGCTACCCCCAACTTTTCCATAGGGGATGGATCAAGACAAGACAACGACCCTTTGCTTTTCTCTCTTTCTAGTGTTGAGCTGATAACAGAACCTAAGCCAGAAGTGGATGTTGAGTGGAATTCTGTCTCTGGTCCAGGGCTTCAGAAGCTACCAGTGAGAAGGAATATTAAGTGTGAGGGCGATGGTGATGTTTCTTTTGGAAGTAAATTTTCGCAGGCTGAGTTTTTAACACAAGATGGAACAAGTAATCTGTCAGCTGCAGAGAAGGCATCATCCCCTTCTGTAGGATATGACTCTGCTGTTTGCCTGGACAGCAATCTGCTGAATGACTGTGGAAGTGTAAGTTATGAATTTATGGAGTTTGAACCCCATACCTACTTCTCTGTAACGGAATTACTGCTCCCAGATGATAGTCAGTTTGAGGGAGCTGATATATCTGGGGACTTGTCAGGATACTTGGAAAATTCTTGCTCTATGAAAGGTGTTCCTGAAGAATGTGGAGCTTTTGATTTAGTTGATAAACCGGAACCTGCAAATTCCTTACAAGGCAGTGTTTATAATTGTTGGCAATGCTTGCAGATGGAACCAGCTCCTGATCTCTCTTGTGAGATTTGTGGGCTTTGGATTCACAGCCAATGTTCACCTTGGGTCGAATCACCATCTATGTCAGGAAGCTGGAGAGATCAGTTGACTTATCCAGCTATGGTTTCTTTGCTGACAGCTCACATAGATGATTGCTATTTCCCCGATAAAAATTCTCATTTTTTGGAGAATATCAAATCCAAACTGTTACAATTGGTTCTATCTGAGGCAATATCTTACATGCTATCAAGTGTGACACAAACCAGTGAAACTGGGAAGGGGGTACACAAAACTAAAACCCTCCCAAAAGATATAAAATCTCGCTCAAGGGAGATAATCACTTTGTGCAGAAAGAATCTCAAACGCCGACCAACAAATCGCCACTCAAACACTGCTGGTAACAAACTAGCTCACCCTCAATTCCGCCAGCCCCTCCATCATGGTCTTTTTTTCATCCACCCCTCTAGCTTGAGAGACATGGGTGTGGGTCCGGCTGTGTAA 4407 0.4218 MEPPVVRSRGRPRKRRRKEDENGTDDRRSAPDLKRQAPGTRSIALVGRYVLKEFKGSGVFLGKVVYYEYGLYRVSYEDGDFEDLDSSEIRGILLNDSDFDDGLIQRKNILDDSVLKNRAKITDGSEKSSADPNKDVCDDEAPVSSELPGGPSIEHNRVEVEEDPDSSSDSFAGSKERDWGSDTDTPSLPPLQLPPSSGTIGVPEPYVSHLFAVYGFLRSFSTRLFLSPFSLDEFVGSLNCRVSNTLIDAVHVSLMRVLRRHLEALSSEGSEHASKCLRCNDWGLLDTLTWPVFVIQYLAVNGYTEGPEWKGFYDEVFNGEYYLLPVARKLIILQILCDDVLESEELKAEMINREELEVGMEYDAEDILPAENWPRRVHPRNAKTSACKDKEATKFVSEPNCLKLPGNSVLDFRDTERTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKIDMTGPTIVKGTSLRGAELFGMDLYGQLFMGTCNHLLVLTINCELCLRYYNRNDISKVLQVLYASVEHRPLYYGIIMAVSQYWNISESILPVAVATGTHHLLLELEENIRLISFTGDWFKLMDDWLVESSMIQSAASSVGTIQTRVLSGRRYKKQLAVGEVTVDGCHENNFAWWHGGKFTKFIFQKAVLPKSMVRKAARQGGLRKISGISYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHLRWSDLICPEQILQDGKGQETESSAFRNANICDKKEVEGKIFYGIAFGNQKHLPSRIMKNVTEIEQAPEGKEKYWFSEARVPLYLIKEYEEVIEKVPSQKEYLNLESQLQRRRLKAMCKDIFFYLTCKRDNLDMFSCSVCQLGVLIGNAFKCSACQGYCHQGCSLSSTFSKNEEVEFLTTCKQCYHTKLLAQKETRNESPTSPLLLQGQEHSSLTVLKGPRPKCNDQALASAGKKDTRPDVKQGASDSTLPTKSRRRNCSWGIIWKKKNIDNTGIDFRLKNILLKGGSGAPQLEPVCHLCRKPYRSDLMYICCETCKNWYHAEAVELEESKIFDVFGFKCCKCRRIKSPVCPYSDSKQKMQEGTKTHPKTSKKDQSGMMSELKECESATPNFSIGDGSRQDNDPLLFSLSSVELITEPKPEVDVEWNSVSGPGLQKLPVRRNIKCEGDGDVSFGSKFSQAEFLTQDGTSNLSAAEKASSPSVGYDSAVCLDSNLLNDCGSVSYEFMEFEPHTYFSVTELLLPDDSQFEGADISGDLSGYLENSCSMKGVPEECGAFDLVDKPEPANSLQGSVYNCWQCLQMEPAPDLSCEICGLWIHSQCSPWVESPSMSGSWRDQLTYPAMVSLLTAHIDDCYFPDKNSHFLENIKSKLLQLVLSEAISYMLSSVTQTSETGKGVHKTKTLPKDIKSRSREIITLCRKNLKRRPTNRHSNTAGNKLAHPQFRQPLHHGLFFIHPSSLRDMGVGPAV 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0449 1468 SMART testlast3 204 264 IPR018501 -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 1 37 - -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 122 141 - -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 155 182 - -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 1081 1101 - -
Glsi04g0449 1468 SUPERFAMILY FYVE/PHD zinc finger 416 477 IPR011011 -
Glsi04g0449 1468 CDD Tudor_AtPTM-like 46 94 IPR047365 -
Glsi04g0449 1468 ProSiteProfiles Zinc finger PHD-type profile. 427 474 IPR019787 -
Glsi04g0449 1468 Pfam DDT domain 207 261 IPR018501 -
Glsi04g0449 1468 ProSitePatterns Zinc finger PHD-type signature. 430 471 IPR019786 -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 949 975 - -
Glsi04g0449 1468 Pfam PHD-finger 430 472 IPR019787 -
Glsi04g0449 1468 PANTHER PHD FINGER FAMILY PROTEIN 41 556 - -
Glsi04g0449 1468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 476 IPR013083 -
Glsi04g0449 1468 ProSiteProfiles DDT domain profile. 204 264 IPR018501 -
Glsi04g0449 1468 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 308 350 IPR028942 -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 15 34 - -
Glsi04g0449 1468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1007 1083 IPR013083 -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 122 197 - -
Glsi04g0449 1468 SUPERFAMILY FYVE/PHD zinc finger 1013 1071 IPR011011 -
Glsi04g0449 1468 MobiDBLite consensus disorder prediction 1076 1101 - -
Glsi04g0449 1468 CDD PHD_SF 1017 1064 - -
Glsi04g0449 1468 SMART PHD_3 857 906 IPR001965 -
Glsi04g0449 1468 SMART PHD_3 429 472 IPR001965 -
Glsi04g0449 1468 SMART PHD_3 1017 1065 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0449 Glsi-ChrGlsi04 3001206 3009126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0449 294 576 EF-hand Containing Proteins AT5G22760 50.859 1.83e-78 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Glsi04g0449 DDT 5.9e-11 No_clan