LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g0442	ATGGCGGAGGACCGAAACGGCGATAGGAATGAGGGAAGTGATTTCAGTTCTGAGGACGAAGGGACCGAGGATTATAGGCGAGGGGGATATCATGCGGTTCAAATTGGAGATACATTCAAAAATGGGTGCTATGTGGTGCAGAGCAAGCTGGGCTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGATATCCAGAGATCGCGTTATGTAGCCCTAAAAATTCAGAAGAGTGCCCAGCACTACACTGAAGCTGCGATGGACGAAATAAAGATTCTTAAACAGATTGCAGAGGGGGACCCAGATGACAAGAAATTTGTAGTAAAGCTTTTGGATCACTTCAAGCATGCAGGGCCCAATGGTCAGCATGTGTGTATGGTTTTTGAATTTCTGGGTGACAATCTTCTGACCCTTATCAAGTATAGTGATTACCGAGGGATTCCTCTCTCCATGGTTAAAGAAATTTGTTTCTATATTTTGGTGGGATTGGATTACTTGCATCGTGAGCTATCTGTAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCAATGATAGATCCATTCAAGGATCCTAGAAAAACAGGTGTTCCACTTATCCAGCCAAACACCAAGGATAAGACTACGTCAAAAAATGGGATCACAAAAGACAATAATAGTTCAAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGTAAAAAGGCTAAGAAGGCAGCTCGAAGTTGTGCTGAGAAGGAAAGTCCCAAGGAAGGTGAGGAAGATTCTAAACCACCTGACCAAGAAAATTCTAGTAATGATGTGAAATCCATTGCAGAATTTGTTGAAGATAAACCTAATAGCCCTGTCAGTAAAGATGAATCAATAGAGGTTGTTGAAACTAAGGATATTCCTGAAGGAAGTCATAGTCACCAGAGAAGTAGTCACACCATGAGAAATAAACTGCTTGCAGCCGTTGATCTTAAATGCAAGCTGGTTGATTTTGGAAATTCTTGTTGGACTTATAAGCAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTTATTCTTGGATCTAAATATTCAACTCCAGTTGATTTATGGTCATTTGCCTGCATTTGCTTTGAGCTCTCCACTGGCGATGTTCTTTTTGATCCTCACAGTGGTGACCACTATGATAAAGATGAGGATCATTTGGCATTGATGATGGAGCTTCTTGGAATTATGCCTCGCAAGATTGCACTAGGTGGCCGCTATTCTCGCGAGTTTTTTAATAGATATGGTGATTTAAAGCACATCCGTCGGTTGCGTTTCTGGCCTCTCAGTAAGGTTCTGATGGAGAAGTATGATTTCAGTGAGCAAGATGCAAATGACATGGCTGCCTTCCTTGTTCCGTTACTTGATTTTGCCCCTGAAAAGAGGCCAACAGCAGCTCAGTGCCTTAATCATCCATGGATCAGTGCAGGTCCTCGGATTCTTGAGCCCTCAGTGACATCTGTGCAACCTGAGGCCACAAACGGGGGAATGTCTGAAAATATGAAGAGGGAAAAGGCTGAGCTGGAGGCAGTGGAAGTTAGCATGGGGAACATGGCTATTGACGGAACTACAAACCCACTTAAAGAGTCCCAACCAATGAAGTCACCTAAATAG	1647	0.4305	MAEDRNGDRNEGSDFSSEDEGTEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDIQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKFVVKLLDHFKHAGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPLSMVKEICFYILVGLDYLHRELSVIHTDLKPENVLLLSMIDPFKDPRKTGVPLIQPNTKDKTTSKNGITKDNNSSNGDLTKNQKKKLRKKAKKAARSCAEKESPKEGEEDSKPPDQENSSNDVKSIAEFVEDKPNSPVSKDESIEVVETKDIPEGSHSHQRSSHTMRNKLLAAVDLKCKLVDFGNSCWTYKQFTNDIQTRQYRCPEVILGSKYSTPVDLWSFACICFELSTGDVLFDPHSGDHYDKDEDHLALMMELLGIMPRKIALGGRYSREFFNRYGDLKHIRRLRFWPLSKVLMEKYDFSEQDANDMAAFLVPLLDFAPEKRPTAAQCLNHPWISAGPRILEPSVTSVQPEATNGGMSENMKREKAELEAVEVSMGNMAIDGTTNPLKESQPMKSPK	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g0442	548	FunFam	CMGC/SRPK protein kinase	30	129	-	-
	Glsi04g0442	548	Pfam	Protein kinase domain	318	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g0442	548	Pfam	Protein kinase domain	44	184	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g0442	548	MobiDBLite	consensus disorder prediction	242	264	-	-
	Glsi04g0442	548	MobiDBLite	consensus disorder prediction	1	24	-	-
	Glsi04g0442	548	MobiDBLite	consensus disorder prediction	202	227	-	-
	Glsi04g0442	548	Gene3D	Transferase(Phosphotransferase) domain 1	127	486	-	-
	Glsi04g0442	548	MobiDBLite	consensus disorder prediction	194	268	-	-
	Glsi04g0442	548	SUPERFAMILY	Protein kinase-like (PK-like)	39	496	IPR011009	-
	Glsi04g0442	548	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	15	505	-	-
	Glsi04g0442	548	Gene3D	Phosphorylase Kinase; domain 1	20	126	-	-
	Glsi04g0442	548	SMART	serkin_6	44	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g0442	548	ProSitePatterns	Protein kinases ATP-binding region signature.	50	73	IPR017441	GO:0005524
	Glsi04g0442	548	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Glsi04g0442	548	CDD	STKc_SRPK	33	485	-	-
	Glsi04g0442	548	FunFam	Serine/threonine-protein kinase SRPK-like protein	315	485	-	-
	Glsi04g0442	548	ProSiteProfiles	Protein kinase domain profile.	44	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g0442	Glsi-ChrGlsi04	2951317	2955227	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g0442	1	534	EF-hand Containing Proteins	AT5G22840	65.562	0.0	711

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Glsi04g0442		Pkinase	1.6e-20	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi14g1619	14	16564355	16567614	Glsi04g0442	04	2951317	2955227	CCT