Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0442 ATGGCGGAGGACCGAAACGGCGATAGGAATGAGGGAAGTGATTTCAGTTCTGAGGACGAAGGGACCGAGGATTATAGGCGAGGGGGATATCATGCGGTTCAAATTGGAGATACATTCAAAAATGGGTGCTATGTGGTGCAGAGCAAGCTGGGCTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGATATCCAGAGATCGCGTTATGTAGCCCTAAAAATTCAGAAGAGTGCCCAGCACTACACTGAAGCTGCGATGGACGAAATAAAGATTCTTAAACAGATTGCAGAGGGGGACCCAGATGACAAGAAATTTGTAGTAAAGCTTTTGGATCACTTCAAGCATGCAGGGCCCAATGGTCAGCATGTGTGTATGGTTTTTGAATTTCTGGGTGACAATCTTCTGACCCTTATCAAGTATAGTGATTACCGAGGGATTCCTCTCTCCATGGTTAAAGAAATTTGTTTCTATATTTTGGTGGGATTGGATTACTTGCATCGTGAGCTATCTGTAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCAATGATAGATCCATTCAAGGATCCTAGAAAAACAGGTGTTCCACTTATCCAGCCAAACACCAAGGATAAGACTACGTCAAAAAATGGGATCACAAAAGACAATAATAGTTCAAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGTAAAAAGGCTAAGAAGGCAGCTCGAAGTTGTGCTGAGAAGGAAAGTCCCAAGGAAGGTGAGGAAGATTCTAAACCACCTGACCAAGAAAATTCTAGTAATGATGTGAAATCCATTGCAGAATTTGTTGAAGATAAACCTAATAGCCCTGTCAGTAAAGATGAATCAATAGAGGTTGTTGAAACTAAGGATATTCCTGAAGGAAGTCATAGTCACCAGAGAAGTAGTCACACCATGAGAAATAAACTGCTTGCAGCCGTTGATCTTAAATGCAAGCTGGTTGATTTTGGAAATTCTTGTTGGACTTATAAGCAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTTATTCTTGGATCTAAATATTCAACTCCAGTTGATTTATGGTCATTTGCCTGCATTTGCTTTGAGCTCTCCACTGGCGATGTTCTTTTTGATCCTCACAGTGGTGACCACTATGATAAAGATGAGGATCATTTGGCATTGATGATGGAGCTTCTTGGAATTATGCCTCGCAAGATTGCACTAGGTGGCCGCTATTCTCGCGAGTTTTTTAATAGATATGGTGATTTAAAGCACATCCGTCGGTTGCGTTTCTGGCCTCTCAGTAAGGTTCTGATGGAGAAGTATGATTTCAGTGAGCAAGATGCAAATGACATGGCTGCCTTCCTTGTTCCGTTACTTGATTTTGCCCCTGAAAAGAGGCCAACAGCAGCTCAGTGCCTTAATCATCCATGGATCAGTGCAGGTCCTCGGATTCTTGAGCCCTCAGTGACATCTGTGCAACCTGAGGCCACAAACGGGGGAATGTCTGAAAATATGAAGAGGGAAAAGGCTGAGCTGGAGGCAGTGGAAGTTAGCATGGGGAACATGGCTATTGACGGAACTACAAACCCACTTAAAGAGTCCCAACCAATGAAGTCACCTAAATAG 1647 0.4305 MAEDRNGDRNEGSDFSSEDEGTEDYRRGGYHAVQIGDTFKNGCYVVQSKLGWGHFSTVWLAWDIQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKFVVKLLDHFKHAGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPLSMVKEICFYILVGLDYLHRELSVIHTDLKPENVLLLSMIDPFKDPRKTGVPLIQPNTKDKTTSKNGITKDNNSSNGDLTKNQKKKLRKKAKKAARSCAEKESPKEGEEDSKPPDQENSSNDVKSIAEFVEDKPNSPVSKDESIEVVETKDIPEGSHSHQRSSHTMRNKLLAAVDLKCKLVDFGNSCWTYKQFTNDIQTRQYRCPEVILGSKYSTPVDLWSFACICFELSTGDVLFDPHSGDHYDKDEDHLALMMELLGIMPRKIALGGRYSREFFNRYGDLKHIRRLRFWPLSKVLMEKYDFSEQDANDMAAFLVPLLDFAPEKRPTAAQCLNHPWISAGPRILEPSVTSVQPEATNGGMSENMKREKAELEAVEVSMGNMAIDGTTNPLKESQPMKSPK 548
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0442 548 FunFam CMGC/SRPK protein kinase 30 129 - -
Glsi04g0442 548 Pfam Protein kinase domain 318 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0442 548 Pfam Protein kinase domain 44 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0442 548 MobiDBLite consensus disorder prediction 242 264 - -
Glsi04g0442 548 MobiDBLite consensus disorder prediction 1 24 - -
Glsi04g0442 548 MobiDBLite consensus disorder prediction 202 227 - -
Glsi04g0442 548 Gene3D Transferase(Phosphotransferase) domain 1 127 486 - -
Glsi04g0442 548 MobiDBLite consensus disorder prediction 194 268 - -
Glsi04g0442 548 SUPERFAMILY Protein kinase-like (PK-like) 39 496 IPR011009 -
Glsi04g0442 548 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 15 505 - -
Glsi04g0442 548 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Glsi04g0442 548 SMART serkin_6 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0442 548 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Glsi04g0442 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Glsi04g0442 548 CDD STKc_SRPK 33 485 - -
Glsi04g0442 548 FunFam Serine/threonine-protein kinase SRPK-like protein 315 485 - -
Glsi04g0442 548 ProSiteProfiles Protein kinase domain profile. 44 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi04g0442 Glsi-ChrGlsi04 2951317 2955227 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0442 1 534 EF-hand Containing Proteins AT5G22840 65.562 0.0 711
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Glsi04g0442 Pkinase 1.6e-20 CL0016
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1619 14 16564355 16567614 Glsi04g0442 04 2951317 2955227 CCT