Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0440 ATGTCTGGCCGCGGTGGTGGTAGACAATCTGACATACGCCGGGATCAGTCTTATCCGGCGGTATCGTCACCAATCCAGAGCAGAGGTGCTGGTCGAGGCCACGGTTCTGTTATACTTCCTCAACCCGCACCTGGGCCGTCTGCTTCTCTGCCAGCTGTGATGACTTCATCCAGTTTGTCGAATACCCATTCAACTTCTATTTCTTTGGCAGCTCCATCTGCGATTATGGATTTGACTTCAAAGCTTGAGCAGCACCTCACTGTACATTCTTCAGTGCCATCATCTTCGAAGGCCGTGAGGTTTGCCGACCGACCAGATTATGGTAAGGTTGGAAAAAATATTCAAGTTCGTGCTAATCATTTTTTAGTACAAGTTGCAGATCAAGATCTTCATCACTACGACGTATCGATAACTCCAGAGGTTTCTTCAAAATTGGTAAACAGAAATGTGATGAATCAGTTATTGGAGAGGTATAAAGAGTCACACTTGGGTAAGCGTATACCAGCCTATGATGGCCGGAAGAGCATTTTTACAGCAGGCCCATTGCCCTTTACGTCAAAAGAATTTGTGGTCAAGTTGGTTGACAAAAATGCCTCGTCATCTTCTGCTCCATCGAGAAAAGAACGCGAACGCGAGTTTAAGGTCTTAATTCGATATGCTTCTAAGGCTGATCTCCATCATCTGCAACAGTTTCTAAGACGTTTGCAATTGGACAATCCACATGAAACCATACAAGCTCTTGATGTTGTTATGAGGACATCGCCCTCGGAAAAGTACACCGTGGTGGGGAGGTCCTTTTTCTCACCCAGTTTGGGTCAAAACGGTGTGCTTGGTGATGGTATGGAATATTGGAGAGGATATCATCAAAGCATTCGCCCAACCCAGATGGGACTTTCCCTCAATATTGATATATCGGCCCGGTCATTCTATGAACCAATCCTTGTGACTGATTTTGTCTCAAAACATTTTAATTTCAATATGACAAGGCCTCTGTCTGATCAAGATCGTATTCAGATTAAGAAGGCTATGAAAGGAGTCAAGGTAGAACTTACTCACGGAGAGTATACTAGAAGTTATACAATCACTGGAGTCTCAAAAGATCCGCTCAATGCGTTAACGTTTATTCTTGATGACAAGAGAACGAAAAAGACCGTAGTTCAATATTTTCGTGAAAACTACAACATTGTACTCAAGTTTTTGGCTCTTCCTGCCCTTCAAGCTGGGAGAGACTCAAAGCCTGTTTATTTGCCGATGGAGCTTTGTCAGATTGCGGCTGGGCAGAGGTACTCCAAGAGATTGAATGAGAAGCAAGTGACTGCAATTTTAAAGGCAACCTGTCAGCGTCCTCATGAGAGGGAAAACTACATAAAACAGATGGTTAGGCAGAACAATTTCAACAGAGACAAAATTGTGCATGAATTTGGAATTAAAGTGAGGGAAGAACTTGCTTTGGTTAATGCTCGTGTTTTGCCTCCACCAACGCTTAAATATCATGATACGGGGAAAGAACGATGTGTCGACCCCTGGATGGGTCAGTGGAATTTGATAAACAAGAAATTGATTGATGGTGGCAAGGTGCTGTATTGGACTTGTCTCAACTTTTCTGCACGAGTGCACGGAGATTTTCCATTTCAATTTTGTAGTGAGTTGATCAATATGTGCACCGGCAAGGGAATGGTTTTCAACCGAGACCCTTTGATTCCTATAAGCACAGCTCACCCTAGTCAAATAGAGAGAGCTCTAGTGGATGTTCACAAGCAGTCTAGGGCAAAACTTGCAAACATGAAGCAGGAGGGGAAACTTCAGTTGTTGATTATAATTTTGCCTGATACCAGTGGGTCTTATGGGAAGATAAAGCGTATTTGTGAAACAGAATTGGGAATAATATCTCAGTGCTGCCTCCCCAAGAATGCTTCTAAGCTAAATAAGCGGTATCTTGAAAATGTGGCCCTCAAGATAAATGTCAAGGCTGGCGGAAGAAACACTGCGTTAAATGACGTAGTCAAGAAAAACATTCCACATCTGACTAGTCTCCCTACAATAATCTTTGGTGCAGATGTAACGCATCCAGAACCTGGGGAGGACTCTGGTCCTTCCATAGCAGCGGTGGTCGCATCCATGGATTCGTGGGTCACAAATTACAGGGGAATCGTTTCTGCTCAGCCTCACCGTGAAGAAATTATACAAGATCTCTATAAAACTGTTTACGATCCCAAGAGGGGACATGTACATGGTGGAATGATTAGGGAGCTACTTATTGCATTCTATAAAGCGACCAACACTAAGCCTCACAGGATTATATTCTACAGAGATGGAGTGAGTGAAGGTCAATTCAGCCAGGTTTTGCTTCATGAGATGGAAGCAATAAGAAAGGCTTGCGCCTCTATAGAAGCTGGATATCTACCACGAGTTACCTTCGTGGTGGTACAGAAAAGACATCACACCCGTCTCTTTCCCGCAGATCACCAAAATCGTGATCAGACAGATAAAAGTGGAAACATTCTGCCTGGTACTGTTGTTGATACAAGTATTTGCCACCCCAGAGAGTATGATTTTTACCTCAACAGCCATGCTGGAATCCAGGGGACCAGCAAGCCTGCACACTATCATGTACTGTATGATGAGAACAATTTAAAGGCAGATGAGTTGCAGTCGTTAACAAACAACTTATGTTATACTTATGCAAGGTGCACTCGATCAGTTTCAATAGTTCCTCCAGCTTATTATGCACATTTGGCAGCTTTTAGAGCCCGTTGCTATATTGAAGGTCAAACATCAGAAATGAGTTCTTTGGTCAGAGGTAGGAACACTGACGTAGCGGTGACCATCCCCTCAATCAAAGAGAATATCAAAGAAGTGATGTTTTACTGCTGA 2874 0.4342 MSGRGGGRQSDIRRDQSYPAVSSPIQSRGAGRGHGSVILPQPAPGPSASLPAVMTSSSLSNTHSTSISLAAPSAIMDLTSKLEQHLTVHSSVPSSSKAVRFADRPDYGKVGKNIQVRANHFLVQVADQDLHHYDVSITPEVSSKLVNRNVMNQLLERYKESHLGKRIPAYDGRKSIFTAGPLPFTSKEFVVKLVDKNASSSSAPSRKEREREFKVLIRYASKADLHHLQQFLRRLQLDNPHETIQALDVVMRTSPSEKYTVVGRSFFSPSLGQNGVLGDGMEYWRGYHQSIRPTQMGLSLNIDISARSFYEPILVTDFVSKHFNFNMTRPLSDQDRIQIKKAMKGVKVELTHGEYTRSYTITGVSKDPLNALTFILDDKRTKKTVVQYFRENYNIVLKFLALPALQAGRDSKPVYLPMELCQIAAGQRYSKRLNEKQVTAILKATCQRPHERENYIKQMVRQNNFNRDKIVHEFGIKVREELALVNARVLPPPTLKYHDTGKERCVDPWMGQWNLINKKLIDGGKVLYWTCLNFSARVHGDFPFQFCSELINMCTGKGMVFNRDPLIPISTAHPSQIERALVDVHKQSRAKLANMKQEGKLQLLIIILPDTSGSYGKIKRICETELGIISQCCLPKNASKLNKRYLENVALKINVKAGGRNTALNDVVKKNIPHLTSLPTIIFGADVTHPEPGEDSGPSIAAVVASMDSWVTNYRGIVSAQPHREEIIQDLYKTVYDPKRGHVHGGMIRELLIAFYKATNTKPHRIIFYRDGVSEGQFSQVLLHEMEAIRKACASIEAGYLPRVTFVVVQKRHHTRLFPADHQNRDQTDKSGNILPGTVVDTSICHPREYDFYLNSHAGIQGTSKPAHYHVLYDENNLKADELQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARCYIEGQTSEMSSLVRGRNTDVAVTIPSIKENIKEVMFYC 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0440 957 SMART Piwi_a_2 603 922 IPR003165 GO:0003676
Glsi04g0440 957 FunFam protein argonaute 10-like 671 957 - -
Glsi04g0440 957 CDD Piwi_ago-like 469 921 IPR045246 -
Glsi04g0440 957 Pfam PAZ domain 338 440 IPR003100 GO:0005515
Glsi04g0440 957 Pfam Argonaute linker 1 domain 262 311 IPR014811 -
Glsi04g0440 957 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 97 923 - -
Glsi04g0440 957 Pfam Argonaute linker 2 domain 451 497 IPR032472 -
Glsi04g0440 957 Gene3D - 489 666 - -
Glsi04g0440 957 CDD PAZ_argonaute_like 315 424 - -
Glsi04g0440 957 SUPERFAMILY PAZ domain 309 466 IPR036085 GO:0005515
Glsi04g0440 957 MobiDBLite consensus disorder prediction 1 56 - -
Glsi04g0440 957 Pfam N-terminal domain of argonaute 112 251 IPR032474 -
Glsi04g0440 957 SMART PAZ_2_a_3 317 450 IPR003100 GO:0005515
Glsi04g0440 957 FunFam Argonaute 10 489 665 - -
Glsi04g0440 957 Gene3D paz domain 307 429 - -
Glsi04g0440 957 SUPERFAMILY Ribonuclease H-like 598 922 IPR012337 -
Glsi04g0440 957 Gene3D - 672 957 IPR036397 GO:0003676
Glsi04g0440 957 SMART DUF1785_2 260 312 IPR014811 -
Glsi04g0440 957 Pfam Piwi domain 604 921 IPR003165 GO:0003676
Glsi04g0440 957 ProSiteProfiles PAZ domain profile. 313 425 IPR003100 GO:0005515
Glsi04g0440 957 ProSiteProfiles Piwi domain profile. 603 922 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0440 Glsi-ChrGlsi04 2930390 2936170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0440 92 957 Eukaryotic Initiation Factors Gene Family AT1G48410 58.268 0.0 1067