Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0434 ATGGAACTCTACAACCGTAGACTGCTCCTACTGAACGAAGATGAACCCTCCTCCACCATATCCCCTCATCCTCTTCTCCAAGATCCTGACCCCTCCTCCGCCGACTCATCGTCACCACCGGGATTGATGGCCGCACCGTCGTCGTCGTCGCCGTCATCGTCACTGTCGAGATGGCCTTTGAAACTGCCGGCACCTTCCGCCTTCAATCCGAATGTCGCTTACACCTTCATTATCCTCATCACCGCCCTTTTCTTAATGGGTTTCCTCTCCCTGTACGTCCGTAGGTTCGCCGACGACTACCCCAGCGCAGAATCATTCTTCATCCGCCGCCGCCGCCGCCAATTGTCTTCGTTGTCTACGAGTTATTATTCTACGTCAGCCCGATGCGGAGGTCTGAGCCATAGCACCATCCAATCCCTGCCGGTGTTTGCGTACCAAGGAGAAGCGAAGCACCAGGTTGATTGCGCCATTTGTCTTGGCGAGTTCCAGGACGGCGAGGCCGTTAAGATGATTCCGCACTGTAAGCACGTGTTTCACCCCGAATGTATCGAAGCGTGGCTATCCTCGCACGTGACATGCCCGATTTGCCGGGGCTACTGTGAAAGAGAGCGTAGAGTTGGGGAAGGCGAAACGGGGTGGAGATGA 645 0.5566 MELYNRRLLLLNEDEPSSTISPHPLLQDPDPSSADSSSPPGLMAAPSSSSPSSSLSRWPLKLPAPSAFNPNVAYTFIILITALFLMGFLSLYVRRFADDYPSAESFFIRRRRRQLSSLSTSYYSTSARCGGLSHSTIQSLPVFAYQGEAKHQVDCAICLGEFQDGEAVKMIPHCKHVFHPECIEAWLSSHVTCPICRGYCERERRVGEGETGWR 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0434 214 SMART ring_2 155 196 IPR001841 -
Glsi04g0434 214 FunFam E3 ubiquitin-protein ligase ATL6 120 203 - -
Glsi04g0434 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 201 IPR013083 -
Glsi04g0434 214 ProSiteProfiles Zinc finger RING-type profile. 155 197 IPR001841 -
Glsi04g0434 214 MobiDBLite consensus disorder prediction 15 53 - -
Glsi04g0434 214 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 48 200 - -
Glsi04g0434 214 SUPERFAMILY RING/U-box 137 200 - -
Glsi04g0434 214 CDD RING-H2_EL5-like 154 197 - -
Glsi04g0434 214 Pfam Ring finger domain 154 197 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0434 Glsi-ChrGlsi04 2850756 2851400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0434 67 197 C3H Transcription Factor Family AT2G27940 45.324 3.17e-33 117