Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0433 ATGGCTATTGCTGGTCTGCACAATGTGTCTGTGCTTGACTCTTCTTTCCTGAGGGACTCCCGTTCTCAATCATCCAGGAGGCGAGGGGATGGAAGGAGGGGAAGCACCCGGTCATCTTCACCTTTCCAAATGTGGCAAGAGACTGAGGATGAGCATGTGGTGAGTCAAACTCAAGGAAGACCTAGTGAATTAGTGCTTCAACAAAGGACTGATGGGTTGATTGCTAACCTCTCACAGGCACATATGCCAGATAGCTATGAGAGAGGACACAGTGATATAGTGGAAGATGCAGTTTTGGGTGAGAATAGGTGTGAAACATGGTCACAGTCACAAAGTCAAAATGGGTCTCATGATGAACAGGAGGAGTTAAACAATTCTGGTTGTGAAAACTCTTCTGATCTTGGTGAAGTTGAAAGGGGAAGAGTGAGGCAAATATTTAGAGAATGGATGAACAGTGGTGCTAGGGATCATGCATCAAACATTCCCCGAAGAAATAATAATTCTAGGGCAGAATGGCTTGGTGAAACTGAGCAGGAGAGGGTCAGAATCATAAGGGAGTGGGTACAACTGAGTAGCCAGCAGAGAGGTGTTTCTTCTGTGGACAATGGAGAAGAACAATCTGCTGAAATTGGTACCCAAATTGAACGTGTTCGTGATGGATTTGTTGTTAATAAGAATACAGGTCAAATTGACCATACTCGGAGGGGTATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCTGAGAGGGAAAGGCAAAAAGAAGTTCAGGAGTTGTTGGACCATCGGGCTGTATCTCATTTTCCTCATCGCAATCGCATTCAGGCTTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGAGCAGCTGATAGTAAGAGGTCCACCTCTGTCGCAGAGAGTGAATTAGGCTTATTGAGGCAAAAGCAGACTGTATCAGGTTTAAGGGAAGGATTCTTCTCTAGAAAGGAAATTTCTGGTTGCAGCCAAGTAACCAGCAATTCAACTGATACCTTGTCTAACAGTGATATCGATGCTAATACAAATGAACAAACTGGAGCCAACACTTCTCAAATGGTCCCAAATGTTCATTCTGAACTTTCTGAGCCTAATAATAGGGGGAGTGATAGCATTGGGATTTTAGGTGGTCAGAGTTGTTTGCAGGGATCTGCACTTGAGAATTTAGATTGGCAAGACTCTTCTACTCTTATTGAAGGAGGGCAACTACAGCTTTTGGAAATTGAATCAAGAGATGTACAATCATCTCCCAGTGTTGGGATCAAAAGAAGAGATGGCTCTGGACAATGTGTTGAGGTGATTTCAGCTGAAGATACTTTTGATGGTCTTACCCAACAAGATTTGCAAATTGAAGATACTGAGCTTAGCAATGAGCGGGAATTCAGTGAGGAACATAATGAACAGTCTGAGCTGGGTGGTATAAATAACGATGAAAATGGTTTGTCAAATCGTGACAATTGTATAGAGGGCAATATTGTTGATGATGCTCTGGAAGGAGGGCAGCAACTAGATTTTGAAAATGAAGGAAGCGACTGGCTTCCAACTAATTTTGAATGTAGAAATATCCCTGGGGAAAGTATGGATGTTAATAATCTGACCGGTACAGGCAATGAGTGGCCGCAGTGCATCTTGGAGAATGAAGATGGGGGGAACCCTCATCTGCAAGAAGTACCTGAATTGTGGCAGGAAGATGGTGTCTTTCAAGAGGCTGTGGTAAATTGGTTTGGTGGACCTTCTGATCATGAAGGTGCTCCAGTTGGTAGAACTCATGGAGTTTATTTTCCTGATGATGACAATGTGTACAGTGGGGAGCTCAGGGAACTCTTAAGTAGGCGAAGTGTTTCTAATCTCCTTGGCAGCAGTTTTCGTGAGAGTCTTGACCAGTTGATACAATCATATGTCGAAAGGCAAAGTCATGCTCAAATTGAGTGGGAGCTGCAAGAAATAACCCCTTCTTCTGACTCAGTAGAAGAGGACCTGGAGCAGCCGGGCAGGGATCAGATTGGTGGTCAGGAGGGTGCTACTGACAGTCCACTTTACCTGCCCTCATCACCAACACATCCGTCTCAGCCTCCCTGGGACCAACAGTTTCATCAGGACAACTGGCCACAGAATGACACGAATAATCAGCATACTGGAATTGAGTGGGAGATTATTAATGGCTTGAGGATTGACATGACTAGGCTACAGGAGAGGATGAATAATATGCAGAGGATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGGCAAGAAGTTTCTGCAGTTCTTAATTGCTCAGCTGGTTCATCAGGATTGCATGACCATGATTCTCCAGATGATAATTTTAAATGGGAGTGTGTGAGAAAAGGACTTTGCTGTATATGCCGTGAGAGCAATATTGATTCTTTATTGTACAGATGTGGGCACATGTCTACGTGTTCAAAATGTGCGAATGAGTTGTTCCAAAGCAGAAAAAATTGCCCAATGTGTCAAGCACCTGTGGTTGAGCTCCTGGACCTTTCTAGGTGGCTGGTGAATGTAGACTTGTGCAATAATGTGTGTCCGCTCCTTATTATGTGA 2607 0.4404 MAIAGLHNVSVLDSSFLRDSRSQSSRRRGDGRRGSTRSSSPFQMWQETEDEHVVSQTQGRPSELVLQQRTDGLIANLSQAHMPDSYERGHSDIVEDAVLGENRCETWSQSQSQNGSHDEQEELNNSGCENSSDLGEVERGRVRQIFREWMNSGARDHASNIPRRNNNSRAEWLGETEQERVRIIREWVQLSSQQRGVSSVDNGEEQSAEIGTQIERVRDGFVVNKNTGQIDHTRRGIRKLCGRQVLLDMLKKAERERQKEVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRAADSKRSTSVAESELGLLRQKQTVSGLREGFFSRKEISGCSQVTSNSTDTLSNSDIDANTNEQTGANTSQMVPNVHSELSEPNNRGSDSIGILGGQSCLQGSALENLDWQDSSTLIEGGQLQLLEIESRDVQSSPSVGIKRRDGSGQCVEVISAEDTFDGLTQQDLQIEDTELSNEREFSEEHNEQSELGGINNDENGLSNRDNCIEGNIVDDALEGGQQLDFENEGSDWLPTNFECRNIPGESMDVNNLTGTGNEWPQCILENEDGGNPHLQEVPELWQEDGVFQEAVVNWFGGPSDHEGAPVGRTHGVYFPDDDNVYSGELRELLSRRSVSNLLGSSFRESLDQLIQSYVERQSHAQIEWELQEITPSSDSVEEDLEQPGRDQIGGQEGATDSPLYLPSSPTHPSQPPWDQQFHQDNWPQNDTNNQHTGIEWEIINGLRIDMTRLQERMNNMQRMLEACMDMQLELQRSIRQEVSAVLNCSAGSSGLHDHDSPDDNFKWECVRKGLCCICRESNIDSLLYRCGHMSTCSKCANELFQSRKNCPMCQAPVVELLDLSRWLVNVDLCNNVCPLLIM 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0433 868 SMART ring_2 801 839 IPR001841 -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 334 362 - -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 107 132 - -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 35 60 - -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 657 716 - -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 107 136 - -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 17 60 - -
Glsi04g0433 868 SUPERFAMILY RING/U-box 800 847 - -
Glsi04g0433 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 848 IPR013083 -
Glsi04g0433 868 Coils Coil 243 270 - -
Glsi04g0433 868 Coils Coil 729 756 - -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 20 34 - -
Glsi04g0433 868 Pfam Zinc finger, C3HC4 type (RING finger) 798 843 - -
Glsi04g0433 868 ProSiteProfiles Zinc finger RING-type profile. 801 840 IPR001841 -
Glsi04g0433 868 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 845 - -
Glsi04g0433 868 MobiDBLite consensus disorder prediction 700 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0433 Glsi-ChrGlsi04 2844432 2849207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0433 800 849 C3H Transcription Factor Family AT4G22250 36.000 1.85e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1632 14 16778495 16782253 Glsi04g0433 04 2844432 2849207 CCT
Glsi04g0433 04 2844432 2849207 Glsi04g0433 04 2844432 2849207 ECH