Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0431 ATGGCGAATGGTACGGATTCGGACGAGTTTGTGGTGTTATCTCGCGTTCGTACGGGTCTGAAGAGGGAGTTTGCATTCGCTATGAAGGCTCAATCAGAGATCTGTGGATCTTTGGGTCGGACCCGTGCCAGCAAGAACCGGAATGGGGTTCAGGATAGTCCGAGCATCAAGAGGTCCAAGAAGTCTGGTTCCTCAGATGCTAAGAACGATGAGCAGAATGGTCCCGTGCCCGAAGATGTGGGAGAACCGAGAAATTTTGAAGGGGTGAAGGGAGAGGAGGCAGAGGCCGTGGAGGATATGGGCGATGATATGAGCGAGGAGGAGGCAAAAAGTGACGTGGTGGATCTCGCTAGCGACGACGAACCCAAGAACCTAGTGGGAGAATCTATGGGAAAGAGGGAACCCGGGGATGAGGCGGCAGTGCCCATGTGTGAAGAGGAACCTAAGAGTGATGTTGTCGAAACTGTGAGCGACGATGAGCCCAAAGTTAGTCCTATGTTAGAATCTTCGAAGGAAGCGACAATGGATGATGTGGCGCAACCCATTTGCCAAGACGGGGCCAAGGAAAATCAAACTAATGTAGAAGATTTGCAGAAGCCATTGACGAGCGAGAGCTTGAGGAAGGAGGAGACATGTTCTCCGAACGAAAAAAGTATTAATGGGACAACCGCTGTTTTTGTTAATGATGACTACAAGGTCCAGTGCATGATAGAGAAGCCACCAAGGCGGTTTACGCGGTCGGCGCTGAGACAAAAAGTGGATGATTCGAAGATAACAAGTGACGGGAAAAACGCTTGTGACAAAGCAATTGGAATAGATGATAATGTTAAGAGGGAAAGTGTGGATGGTCCATTAATCTCGACGCCAATTCAAATGAAAATGTCGAAGGGTACCTTGAAGAAGTTCCCAACGAAGCTAAAGGACCTTCTAGCAACAGGGATTCTTGAGGGACTACCAGTGAAGTATGTCCGGGGATTGAAGGCACGAAAGCCTGGAGAAACAGGGCTTCGAGGAGTGATAAGAGGCTCTGGGATTGTGTGCTATTGTGAAAATTGTAAAGGGGTTGAGGTTGTCACACCCACCGTGTTTGAGCTGCATGCTGGTAGTGCAAATAAACGCCCCCCAGAATATATATACCTTGAGAATGGGAATACCCTCCGTGATGTCATGAATACTTGTTCGAATGTTTCATTGGACGTTTTGGAGGAAGCAGTCCAGAAAGTCATTGGAGGTTTCACAGTGAAGAAATCTGCCATCTGTTTGAACTGCAGAGTGTCTATTTCTCAAGCTGATAAAGGATTGTCAAGACTACTTTGCGATACATGCATGGAGTCAAAACAGTCTCAACCTATCCCTCCTCAAGTAGCTGAGACTAGCAACAACTGTGTTTCACCTGCTGTTACTTCCAGCTGTGTCAGATCACCTGAACCAGTTTTGGTTCCAAAGTCATTAAACAGTGGGATGAAGCACAGCACTTGTCGTGGCAAGAGTCAGGGAAGAATAACTAAGAAAAACTGTTGGTTGGTTACAAAAGGGGATTTGGCATCATTTGTAGCTGCTGTGACTCTGAGGTCAGCCCCTCACAGTTTGAAGCTCATGCTGGTTGGGCATCCCGACGCAAGCCGTGAGTTCTTGTTTATAGTGTTATTGAATGCTGCATCTACCTGTTTTATTTATCTGCACATATACACATCTAACGGAGTCTCTCTCCATGAATTGTCCATCTCTCTATCAAAAGGTCGGAGGTTTTCTGCCCATGAAAATGATGACCTCTGCAGCATATGTTCAGATGGAGGGGATCTTTTATGTTGTGATGGATGCCCGAGGGCTTTTCACATAGACTGCGTTCCCCTACCATGCATTCCAACTGGTACTTGGTATTGTAAATATTGCCAGAACCTGTTCCTAAAAGACAAATATGTGGAGCATAATATGAATGCTTTGGCAGCTGGAAGAATTGCAGGCATTGATCCTTTAGAGCAAATAAACCAAAGATGCATTCGCATTGTCAAAACTTTAGAGGTTGACCATGGTGGATGTACATTGTGCAGAAGCCATGATTTTAGCAAAAGCTTTGGTCCTCGCACAGTGATTATTTGTGATCAGTGTGAAAAGGAATATCATGTCGGCTGTTTGAAGGATCATAACATGCAGAACTTGGAGGAATTGCCTGAAGGAAATTGGTTCTGCTGCTCAGATTGCAGTCAGATTCATTCTGCCCTGCTGAATTTGGTCTCTTGTGGAGAAGAGAAGCTACCAGATTCCCTTTTAAGCATGATACAGAAAAAGTATGAAGAAAAGGGTCTAGAAAATGGGGCTGGTCTTGATATAAAATGGAGGATTTTAAATTGGAAACTGGCTTCTTCTGATGAAACTAGGCAACTGCTTTCAAAGGCCGTTTCCATCTTCCATGAGCGTTTTGATCCTATAGTTGATTCTGCATCAGGCCGCGATTTCATTCCAACAATGCTTTATGGAAGGAACATCAGGGGTCAAGATTTTGGCGGAATGTACTGTGCTGTGCTAACAGTGAACCAAGTGGTCGTTTCTGCAGGGGTATTTCGAATCTTTGGACCAGAAGTGGCAGAGCTTCCCTTAGTGGCAACAATTACTGATTGCCAAGGACAGGGTTATTTCCAGTCCTTGTTTTCTTGCGTTGAAAGGCTGCTTGGATCTTTAAACGTGAGACACCTTGTCTTACCTGCTGCTGATGAAGCCGAATCAATATGGACCAGTAAATTTGGGTTTACAAAGTTAGAGCAAGATGAGATAAACAATTATAAGAAATATTATCACATGATGATATTCCAAGGGACCTCGGTGCTACGGAAGTCCGTTCCTGCATCCTGA 2850 0.4526 MANGTDSDEFVVLSRVRTGLKREFAFAMKAQSEICGSLGRTRASKNRNGVQDSPSIKRSKKSGSSDAKNDEQNGPVPEDVGEPRNFEGVKGEEAEAVEDMGDDMSEEEAKSDVVDLASDDEPKNLVGESMGKREPGDEAAVPMCEEEPKSDVVETVSDDEPKVSPMLESSKEATMDDVAQPICQDGAKENQTNVEDLQKPLTSESLRKEETCSPNEKSINGTTAVFVNDDYKVQCMIEKPPRRFTRSALRQKVDDSKITSDGKNACDKAIGIDDNVKRESVDGPLISTPIQMKMSKGTLKKFPTKLKDLLATGILEGLPVKYVRGLKARKPGETGLRGVIRGSGIVCYCENCKGVEVVTPTVFELHAGSANKRPPEYIYLENGNTLRDVMNTCSNVSLDVLEEAVQKVIGGFTVKKSAICLNCRVSISQADKGLSRLLCDTCMESKQSQPIPPQVAETSNNCVSPAVTSSCVRSPEPVLVPKSLNSGMKHSTCRGKSQGRITKKNCWLVTKGDLASFVAAVTLRSAPHSLKLMLVGHPDASREFLFIVLLNAASTCFIYLHIYTSNGVSLHELSISLSKGRRFSAHENDDLCSICSDGGDLLCCDGCPRAFHIDCVPLPCIPTGTWYCKYCQNLFLKDKYVEHNMNALAAGRIAGIDPLEQINQRCIRIVKTLEVDHGGCTLCRSHDFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCCSDCSQIHSALLNLVSCGEEKLPDSLLSMIQKKYEEKGLENGAGLDIKWRILNWKLASSDETRQLLSKAVSIFHERFDPIVDSASGRDFIPTMLYGRNIRGQDFGGMYCAVLTVNQVVVSAGVFRIFGPEVAELPLVATITDCQGQGYFQSLFSCVERLLGSLNVRHLVLPAADEAESIWTSKFGFTKLEQDEINNYKKYYHMMIFQGTSVLRKSVPAS 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0431 949 ProSiteProfiles Zinc finger PHD-type profile. 589 634 IPR019787 -
Glsi04g0431 949 MobiDBLite consensus disorder prediction 37 58 - -
Glsi04g0431 949 MobiDBLite consensus disorder prediction 35 163 - -
Glsi04g0431 949 CDD PHD1_AIRE 591 631 - -
Glsi04g0431 949 SUPERFAMILY FYVE/PHD zinc finger 581 634 IPR011011 -
Glsi04g0431 949 FunFam PHD zinc finger protein 678 737 - -
Glsi04g0431 949 MobiDBLite consensus disorder prediction 110 158 - -
Glsi04g0431 949 PANTHER AUTOIMMUNE REGULATOR 559 945 - -
Glsi04g0431 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 737 IPR013083 -
Glsi04g0431 949 FunFam PHD finger family protein 776 945 - -
Glsi04g0431 949 Pfam PHD-finger 592 633 IPR019787 -
Glsi04g0431 949 SUPERFAMILY FYVE/PHD zinc finger 672 736 IPR011011 -
Glsi04g0431 949 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 578 655 - -
Glsi04g0431 949 ProSitePatterns Zinc finger PHD-type signature. 592 631 IPR019786 -
Glsi04g0431 949 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 786 947 IPR000182 GO:0016747
Glsi04g0431 949 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 578 654 IPR013083 -
Glsi04g0431 949 MobiDBLite consensus disorder prediction 59 95 - -
Glsi04g0431 949 SMART PHD_3 591 632 IPR001965 -
Glsi04g0431 949 SMART PHD_3 679 735 IPR001965 -
Glsi04g0431 949 Pfam Tify domain binding domain 338 393 IPR032308 -
Glsi04g0431 949 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 835 932 IPR016181 -
Glsi04g0431 949 Gene3D - 776 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0431 Glsi-ChrGlsi04 2822068 2828825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0431 559 946 PHD Transcription Factor Family AT2G36720 55.897 7.81e-153 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi04g0431 TDBD 2e-15 No_clan