Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0428 ATGGATATGGATGGCACAACAGAGGAATTTGTGGGATCGACAACGTCTAATAATCACGATGCCAGTGCCACCCACATCGTCAAGGCCAAGGGCAAGCGCACCAAGAGGCAGAGGCCCTTATCCCCTCTTAATTGTGCTCTTGCCGCCACTATGATGACTTCTAGCTCCTCCACTGCTTCTGGGGATGATCACCATGTCAGTGATGGCGGTGATTATGGGTCGTTTTCGTCTACCACAACCACTTATGAGAGCACAGAGGAAGAGGAAGACATGGCTAACTGCTTAATTCTCTTGGCTCAAGGAGGGGATCCTCATAATCCCAAACAACCTGATCAAGATCAAGCTGGTAATCACACACAGAGAGGTAGCAGTAGCAGCCGAAAATTCGCCGAGATGGCCCCCGCCGCCGCCGCCGCCAGCAAAATTGGTTTCTATATTTATGAGTGCAAAACTTGTAACAGAACCTTCCCTTCGTTTCAAGCGCTAGGTGGGCACAGGGCAAGCCACAAAAAGCCTAAGCCCATGACCGCAGAGGAAAAGAAATTACATCCACCCCCACCATCGCCGAAAGTTACAAGTTATGAGCTCGAAGATGCAGGGAAAGCCGACATCAAAAGCAGCCCTCCAATATCTCTTCAATTTAACAAAGCTGTCCATAGCAACAAGGCCAAGATTCACGAGTGTTCCATATGTGGGTCAGAATTTACATCTGGGCAAGCGTTGGGTGGCCACATGAGGAGGCATCGAGCATCCACAAACAATAGCACTCAGGTGGTGGCCGCCGCCGCCGCGGAGGAAGTCAAGCCCAGAAATGTTCTACAGTTGGATCTTAACTTGCCGGCGCCGGAAGACGTCGATCTCCGGGATTCCAAGTTTCAGTTTAAGGCAACGCAAAAGACTCTGGTGCTGTCTGCTCCGCCTTTGGTGGGTTGCCATTATTAA 942 0.5064 MDMDGTTEEFVGSTTSNNHDASATHIVKAKGKRTKRQRPLSPLNCALAATMMTSSSSTASGDDHHVSDGGDYGSFSSTTTTYESTEEEEDMANCLILLAQGGDPHNPKQPDQDQAGNHTQRGSSSSRKFAEMAPAAAAASKIGFYIYECKTCNRTFPSFQALGGHRASHKKPKPMTAEEKKLHPPPPSPKVTSYELEDAGKADIKSSPPISLQFNKAVHSNKAKIHECSICGSEFTSGQALGGHMRRHRASTNNSTQVVAAAAAEEVKPRNVLQLDLNLPAPEDVDLRDSKFQFKATQKTLVLSAPPLVGCHY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0428 313 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Glsi04g0428 313 MobiDBLite consensus disorder prediction 55 129 - -
Glsi04g0428 313 SMART c2h2final6 147 169 IPR013087 -
Glsi04g0428 313 SMART c2h2final6 226 248 IPR013087 -
Glsi04g0428 313 MobiDBLite consensus disorder prediction 163 192 - -
Glsi04g0428 313 MobiDBLite consensus disorder prediction 110 127 - -
Glsi04g0428 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Glsi04g0428 313 MobiDBLite consensus disorder prediction 8 23 - -
Glsi04g0428 313 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Glsi04g0428 313 Pfam C2H2-type zinc finger 147 172 - -
Glsi04g0428 313 Pfam C2H2-type zinc finger 226 250 - -
Glsi04g0428 313 Gene3D Classic Zinc Finger 202 273 - -
Glsi04g0428 313 PANTHER ZINC FINGER PROTEIN ZAT5 78 298 - -
Glsi04g0428 313 MobiDBLite consensus disorder prediction 171 185 - -
Glsi04g0428 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Glsi04g0428 313 SUPERFAMILY beta-beta-alpha zinc fingers 146 248 IPR036236 -
Glsi04g0428 313 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0428 Glsi-ChrGlsi04 2812345 2813286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0428 24 313 C2H2 Transcription Factor Family AT2G28200 44.300 1.84e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0428 zf-C2H2_6 2.1e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1642 14 16838162 16838980 Glsi04g0428 04 2812345 2813286 CCT
Glsi14g1642 14 16838162 16838980 Glsi04g0428 04 2812345 2813286 ECH
Glsi04g0428 04 2812345 2813286 Glsi04g0428 04 2812345 2813286 ECH