Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0427 ATGGCCTCAACAAATGTTCACCAAGACTCTCTTATGCACTCTAATGACTTTGAGTTGCATGACTTTATCGACGATCCCAACTTTGATCAGTTTATCGATTTGATTCGTGGGGAGAACGAAGACACCATCTGTAACTTTGATCCTGACCTCATCAATGGCTGCTTCCTCGATAATTACCAATTCCCTCCCTGCCCCACAAACCCATTATTTGACTATTCTAACTCGGCTGTGAGCGTTTATGATCAAATTCCAAACTCTAGTGCACTTAGCCCTTTCTCGTTTTTTGATGGGGAACTTAAGGGAGGAGGTGATGAAGAAAATGATGGGGAGGGTTCTTCGGCAACAACAATCACCGCCACCACGCCTACTACGAGTGCTAATTCCAAACCGAGGCCTAAAGCTGATAGGTCTAAGACTTTGATTTCTGAGAGGAGGAGAAGAGGACGAATGAAGGAAAAGCTTTACGCATTGCGTTCTTTGGTTCCCAACATAACCAAGATGGACAAGGCAAGTATAGTTGGAGATGCATTATCTTATGTGGAAGGGCTGCAAGCACAAGCCAAGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCCTTATTAGCCTCAGAAGACTATCAAGGATCAGTTGAAAACCCCATGAAGCTTCAAGGCGCCCAACATCCAATCAGCAAGAAGATCGTGGAGATGGAGGTGATTCAAGTGGAGGAAAGTGGGTTTTATGTGAGATTGGTGTCCAACAAAGGAGAAGGGGTGGCTTCCTCATTGTACAAGGCTCTTGAGTCTCTGGCAGGCTTCACTGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGATTTCAACTTACATTGACATTGAAAGTCAAAGTTAGTGAGGCAGAAATAAACATTCCAAATTTGAAGCTATGGGTGGCAGGAGCTCTTCTGAACCAAGGGTTCGAATTCATAACATATTTTCCTGTTTGA 969 0.4417 MASTNVHQDSLMHSNDFELHDFIDDPNFDQFIDLIRGENEDTICNFDPDLINGCFLDNYQFPPCPTNPLFDYSNSAVSVYDQIPNSSALSPFSFFDGELKGGGDEENDGEGSSATTITATTPTTSANSKPRPKADRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDALSYVEGLQAQAKKLKAEVAGLEASLLASEDYQGSVENPMKLQGAQHPISKKIVEMEVIQVEESGFYVRLVSNKGEGVASSLYKALESLAGFTVQNSNLATVSDRFQLTLTLKVKVSEAEINIPNLKLWVAGALLNQGFEFITYFPV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0427 322 MobiDBLite consensus disorder prediction 109 130 - -
Glsi04g0427 322 Pfam Helix-loop-helix DNA-binding domain 141 184 IPR011598 GO:0046983
Glsi04g0427 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Glsi04g0427 322 Coils Coil 180 200 - -
Glsi04g0427 322 MobiDBLite consensus disorder prediction 99 145 - -
Glsi04g0427 322 MobiDBLite consensus disorder prediction 131 145 - -
Glsi04g0427 322 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 130 200 - -
Glsi04g0427 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 199 IPR036638 GO:0046983
Glsi04g0427 322 Gene3D - 126 200 IPR036638 GO:0046983
Glsi04g0427 322 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 311 - -
Glsi04g0427 322 SMART finulus 140 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0427 Glsi-ChrGlsi04 2787819 2788984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0427 9 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 54.180 5.93e-105 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi04g0427 HLH 4.5e-08 No_clan