Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0426 ATGGAAACTAAATCCCTCCGTTCATCGTTTTCTCAACCATCAGAATCCTCTGAACTCCATCGTACACACCTTTCTTCTATGGAGCTCCGAATTGGGGACTTCGGCTGCACACATTACAGAAGGAGATGCAAGATTAGAGCACCGTGTTGCAATGAGATTTTTGACTGTCGGCATTGCCATAATGAAGCCAAGAACTCTGCTGAAATGAATCCTATGGACCGTCATGATGTTCCCCGCCATGAAATTAAAAAGGTCATCTGTTCCTTATGTGATACAGAGCAAGATGTTCAACAGTATTGCTTAAACTGTGGAGTGTGCATGGGGAAGTACTTTTGTGCTACGTGCAAATTCTTCGACGATGATATTTCAAAGAACCAATACCACTGCGATGAATGTGGCATCTGCAGAACTGGAGGCAAGGATAATTTTTTCCACTGTAAGAGATGTGGGTGCTGCTACTCCCAGGTAATGAAAGAAGGGCACCGATGCGTGGAAGGAGCAATGCATCACAATTGCCCTGTTTGCGTTGAGTACCTCTTTGATACATTGAGAGATATTACCGTCTTGCGTTGCGGGCATACTATGCATTTGGAGTGTGTTAAAGAGATGGAGCAGCATTACAGGTATTCGTGTCCTGTTTGTTCGAAATCCATCTGTGACATGTCAAGTCTGTGGAAGAAGCTTGACCAAGTGGTTGCCTCAACGCCGATGCCTCAAGCTTACAAAGATAAGATGGTTTGGATACTATGCAATGACTGTGGAGTAAACTCTCAAGTGCAGTTCCACATCGTGGCTCATAAGTGTCAAAGTTGCAAGTCATACAACACAAGGCAGATCCAAGGATGCCCTGCTACCTCATGCTCCTCTTCAGTGCCTGAGATGGTGAGATGA 891 0.4489 METKSLRSSFSQPSESSELHRTHLSSMELRIGDFGCTHYRRRCKIRAPCCNEIFDCRHCHNEAKNSAEMNPMDRHDVPRHEIKKVICSLCDTEQDVQQYCLNCGVCMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSQVMKEGHRCVEGAMHHNCPVCVEYLFDTLRDITVLRCGHTMHLECVKEMEQHYRYSCPVCSKSICDMSSLWKKLDQVVASTPMPQAYKDKMVWILCNDCGVNSQVQFHIVAHKCQSCKSYNTRQIQGCPATSCSSSVPEMVR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0426 296 Pfam CHY zinc finger 36 117 IPR008913 GO:0008270
Glsi04g0426 296 Gene3D - 243 285 - -
Glsi04g0426 296 SUPERFAMILY RING/U-box 171 220 - -
Glsi04g0426 296 ProSiteProfiles Zinc finger CTCHY-type profile. 107 171 IPR017921 -
Glsi04g0426 296 MobiDBLite consensus disorder prediction 1 20 - -
Glsi04g0426 296 MobiDBLite consensus disorder prediction 1 22 - -
Glsi04g0426 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 226 IPR013083 -
Glsi04g0426 296 FunFam RING finger and CHY zinc finger domain-containing protein 1 243 287 - -
Glsi04g0426 296 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 280 - -
Glsi04g0426 296 SMART ring_2 172 214 IPR001841 -
Glsi04g0426 296 SUPERFAMILY Zinc hairpin stack 108 165 IPR037275 -
Glsi04g0426 296 Pfam Zinc-ribbon 219 277 IPR039512 -
Glsi04g0426 296 ProSiteProfiles Zinc finger RING-type profile. 172 215 IPR001841 -
Glsi04g0426 296 ProSiteProfiles Zinc finger CHY-type profile. 29 105 IPR008913 GO:0008270
Glsi04g0426 296 Pfam Ring finger domain 171 214 IPR001841 -
Glsi04g0426 296 SUPERFAMILY CHY zinc finger-like 34 107 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0426 Glsi-ChrGlsi04 2783099 2785204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0426 34 280 C2H2 Transcription Factor Family AT3G18290 39.062 1.38e-52 183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0426 04 2783099 2785204 Glsi04g0426 04 2783099 2785204 ECH