Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0410 ATGGGAAGAGCTCCTTGTTGCGACAAGGCGAATGTGAAGAAGGGGCCTTGGTCCCCAGAAGAAGATTCCAAGCTAAAACAGTACATAGAGAAGAATGGCACCGGTGGGAATTGGATTGCTCTTCCTCAGAAAGCAGGTCTAAAGAGATGTGGGAAAAGTTGCAGACTGAGGTGGCTCAACTATCTGAGGCCCAACATTAAGCATGGAGAATTCTCTGATGAGGAAGACAGAATAATATGCAGCCTCTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTCAAGAAAAAGTTCATGGGATTGCTTCCTCTTCCTCCATCTCAGAGATCAAAACCTCCACCCTTTCAATCTTCTCATGAAAACCCACCATTTCCTTCTTCCTCTCAGTCATTTTCATCTCCAATGTACAGAGACTCTAGCTCTTTCTACACTCCAGCAACCATATCTTTCACGGGCCTTGAACCCACTTCTATCCCTTCCACCAATCTTCCTTTCCTCCAAAACCAAGAACCCTTGGTTGCTCCCATGCAATATTACCCTATCAGAGACTGTCTTCTCATGTTTGGGAGTGAAGGAAGTTGCAGTACTTCATCTGATGGCAGCTGTGGCCAGATCAGCCATAGCAGAGAGATCAAGCAAGAAGAAATGGGTTTTCATCACAACTATATGTCCGGTGGGCTAGAAGAGTTCAGCAACAAGTTCATGCTTAGTTCCGGGAATGGAGGCGAAAATATTAACCCGTGGATGGAAAGGCCTAGTGGGTGTTTTGGGCAAACCCCATTGGATTATGGTCTTGAGGATATTAAGCAGCTGATTAATAGCAGTAGCAGTGATAATGGCTATAATGGGTTCTTTAATATTGATGAAAACAAGACACAAGAGAAGGTCATGTACTATTACTGA 960 0.4437 MGRAPCCDKANVKKGPWSPEEDSKLKQYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKFMGLLPLPPSQRSKPPPFQSSHENPPFPSSSQSFSSPMYRDSSSFYTPATISFTGLEPTSIPSTNLPFLQNQEPLVAPMQYYPIRDCLLMFGSEGSCSTSSDGSCGQISHSREIKQEEMGFHHNYMSGGLEEFSNKFMLSSGNGGENINPWMERPSGCFGQTPLDYGLEDIKQLINSSSSDNGYNGFFNIDENKTQEKVMYYY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0410 319 Gene3D - 69 132 - -
Glsi04g0410 319 SMART sant 13 64 IPR001005 -
Glsi04g0410 319 SMART sant 67 115 IPR001005 -
Glsi04g0410 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi04g0410 319 FunFam Transcription factor RAX3 7 68 - -
Glsi04g0410 319 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Glsi04g0410 319 MobiDBLite consensus disorder prediction 125 139 - -
Glsi04g0410 319 PANTHER OS09G0431300 PROTEIN 1 264 - -
Glsi04g0410 319 MobiDBLite consensus disorder prediction 121 152 - -
Glsi04g0410 319 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi04g0410 319 Gene3D - 7 68 - -
Glsi04g0410 319 CDD SANT 16 62 IPR001005 -
Glsi04g0410 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi04g0410 319 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi04g0410 319 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Glsi04g0410 319 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Glsi04g0410 319 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0410 Glsi-ChrGlsi04 2689207 2690627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0410 1 119 MYB Transcription Factor Family AT5G57620 89.916 2.86e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0410 Myb_DNA-binding 1.7e-13 CL0123