Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0407 ATGCAGAGATCTGGTTATGGCCGTGATGGAATATACAGGTCTCTCAGACCTTCCCTTGCTCTACCCAATGATATTAATCTCTCTCTGGTTTCTTTTCTCTTCAGAAATGTCTCCTCTTTTCCCACCAAACCCGCCCTGATCGATGCAGATTCCTCCGAGATTCTGACCTTCGCCCAGCTTAAGTCCTTGGCAGTGAAGGTGTCTCATGGTTTTCTCCGTCTGGGTATCAAGAAAAATGACGTTGTCCTCTTATTTGCACCCAATACCATCTTCTACCCTGTCTGTTTCCTCGGCATCGCCGCTATTGGTGCCATCGCCTCTACTGCCAACCCAATTTACACAGTCGGAGAGCTTTCCAAGCAAGTGGAGGATTCCAATCCCAAGCTTGTAATTACCGTCCCTGAATTATGGGATAAAGTGAAGGATTTCAATCTCTCTGCTGTGATTTTGGGTTCTCAAAGTCCTTCCTTTATTGCATCGAATTCAAAGATTACGACTTTCGATGGGCTGCTTGAGTTAGCTGGGTCCCCAACTGATTTTCCAGCGACAAATGTTCAGCAGAGCGACACAGCGGCGCTTTTGTATTCTTCGGGTACAACGGGTGTCAGTAAGGGTGTAATTCTCAGCCATAAAAACTTCATCGCCGCATCTCTTATGGTGACCATGGATGACGAATTGGCCGGCCGGATGCACGATGTGTTTCTCTGCGTTCTCCCATTGTTTCATGTTTTCGGGCTCTCAGTCCTTTCGATATCGCAGCTTCAGAGAGGCAATTCAGTAGTGTGTATGAAAAAATTCGACTTCGAAACGATGTTAAGGTCAATTGAAAAGTATAGAGTCACTCATTTGTGGGTTGTGCCTCCAATTATTCTTGCTCTGGCAAAACAGAATGTGGTTAAGAAGTATAATCTTTCGTCATTGAGCCAAATTGGTTCTGGTGCTGCTCCTCTAGGGAAAGAATTGATGGAGGAGTGTGCAAAAAATTTTCCTCATGCCGAGGTTACGCAGGGCTATGGTCTGACAGAAACTTGTGGTATTGTTTCTGTGGAGAATTCAAGAATAGGTATTCGTCATACTGGTTCAGCGGGAATGCTTGTTTCAGGAGTTGAAGCTCAAATAATCAGTGTGGATACACTAAAGCCCCTCCCGCCTCGTCAGTTGGGGGAGATATGGGTTCGGGGTCCTAATATGATGCAAGGATACTATAACAATCCGCAGGCCACCAGATTGACTATTGACAAAAAGGGATGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTATGTTGTTGACCGTATCAAAGAACTCATCAAGTATAAAGGTTTTCAGGTTGCACCAGCGGAACTCGAAGGACTTCTTGTTTCTCACCCTGAAATAATAGATGCTGTTGTGATCCCATTCCCTGATGCAGAGGCTGGTGAGGTCCCGATTGCCTATGTTGTTCGTTCACCCCAAAGTTCACTGACTGAAGAAGATGTTCAGACGTTTGTTGCTAGTCAGGTTGCACCTTACAAAAGATTGCGAAGGGTGGCATTCATCAACTCCGTCCCGAAGACAGCTTCAGGAAAAATTCTCAGAAGAGAAATTATTCAGAAAGCTCGATCCAAAATATAA 1629 0.45 MQRSGYGRDGIYRSLRPSLALPNDINLSLVSFLFRNVSSFPTKPALIDADSSEILTFAQLKSLAVKVSHGFLRLGIKKNDVVLLFAPNTIFYPVCFLGIAAIGAIASTANPIYTVGELSKQVEDSNPKLVITVPELWDKVKDFNLSAVILGSQSPSFIASNSKITTFDGLLELAGSPTDFPATNVQQSDTAALLYSSGTTGVSKGVILSHKNFIAASLMVTMDDELAGRMHDVFLCVLPLFHVFGLSVLSISQLQRGNSVVCMKKFDFETMLRSIEKYRVTHLWVVPPIILALAKQNVVKKYNLSSLSQIGSGAAPLGKELMEECAKNFPHAEVTQGYGLTETCGIVSVENSRIGIRHTGSAGMLVSGVEAQIISVDTLKPLPPRQLGEIWVRGPNMMQGYYNNPQATRLTIDKKGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPEIIDAVVIPFPDAEAGEVPIAYVVRSPQSSLTEEDVQTFVASQVAPYKRLRRVAFINSVPKTASGKILRREIIQKARSKI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0407 542 Pfam AMP-binding enzyme 34 444 IPR000873 -
Glsi04g0407 542 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Glsi04g0407 542 Gene3D - 9 439 IPR042099 -
Glsi04g0407 542 ProSitePatterns Putative AMP-binding domain signature. 193 204 IPR020845 -
Glsi04g0407 542 CDD 4CL 21 533 - -
Glsi04g0407 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 537 - -
Glsi04g0407 542 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Glsi04g0407 542 SUPERFAMILY Acetyl-CoA synthetase-like 21 540 - -
Glsi04g0407 542 Gene3D - 440 541 IPR045851 -
Glsi04g0407 542 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0407 Glsi-ChrGlsi04 2673140 2676812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0407 1 542 Monolignol Biosynthesis Gene Families AT4G05160 68.382 0.0 799