Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0403 ATGAGAAAGAAGCTGCGTATAAGATCTCTTTCCTTCTCACATATCCTCAATTCGTCTCTGATCTCATTCCTCTCTTCTCTTCTCGGTTCTCCCAGATTAAAGATGGTGTCAGACGCGAGTAAGAAGAAGGCAGCGCAGAAGAAGGCGGCTGCTGCTGCTAAGAGAGGGGGGAAGGCGGCTGCTGCTGCCTCATCAAAGGCAGCCTCGGAGTCTCAGAAGGTAGCTGATAAGCTTGCCAATGGAATTGGGGATATTGAGATATCAGATCGGACGTGCACCGGCGTCCTATGCTCCCATCCTCTCTCTAGGGATATTCGGATAGAGTCTCTATCAGTTACCTTCCATGGACATGATCTCATAGTTGATTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGATTAAATGGTTGTGGAAAATCTACTCTGCTTACCGCAATAGGTTGCCGGGAGCTTCCAATTCCAGATCACATGGACATTTATCACCTTACTAGAGAAATTGAAGCTTCTGACATGTCTTCATTGGAGGCTGTAATAAGCTGTGATGAGGAAAGGTTGAAATTGGAAAAAGAAGCTGAAGCTTTGGCTGCACAGGAAGATGGAGGTGGTGAAGCTCTTGATCGTATATATGAACGATTGGATGCCATGGACGCATCAACAGCAGAAAAGCGTGCTGCTGAAATCTTATATGGTCTTGGTTTCAACAAGAAGATGCAGGCTAAGAAGACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCATTAGCACGAGCTTTATTTATGAACCCAACCGTTCTTTTACTTGATGAACCAACCAATCACCTTGATTTGGAAGCTTGTGTGTGGTTGGAGGAGAGTTTAAAAAAGTTTGACCGCATTCTAGTTGTGGTTTCACACTCTCAAGATTTCCTTAATGGGGTCTGCACAAACATCATCCACATGCAAAACAAGAAGCTGAAACTCTACACTGGTAACTATGACCAATATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAATACAAGTGGGAACAGGAGCAGATTGCCTCAATGAAGGAATATATTGCCCGATTTGGGCATGGCTCAGCAAAACTAGCTCGCCAGGCACAGAGTAAAGAAAAAACACTGGCAAAAATGGAAAGGGGTGGACTTACAGAGAAGGTGGTTAGAGACAAAGTTTTGGTATTCCGCTTTGTGGATGTGGGAAAGCTTCCCCCTCCTGTCCTTCAGTTTGTTGAGGTGTCATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATTGAGTTTGGGGTTGATTTAGACTCTAGGGTTGCTCTAGTTGGAGCCAATGGAGCTGGGAAGAGTACACTTCTGAAGCTAATGACTGGTGATCTGGCTCCTACTGATGGCATGGTCCGCCGGCATAATCACCTTCGTATTGCTCAGTATCACCAGCACTTGACTGAAAAACTAGACTTGGAAATGTCTGCTCTCCAGTATATGATAAAAGAGTACCCTGGAAATGAGGAAGAGAAGATGAGGGCAGCTGTTGGGAGGTTTGGACTGACAGGTAAAGCCCAGGTGATGCCCATGAAGAATTTATCTGATGGGCAGAAGAGTCGTGTGATTTTTGCATGGTTAGCTTGGAGGCAGCCTCACATGCTGCTTTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCATTGGCTGAGGCATTGAATGAATGGGATGGTGGCATGGTGCTTGTTAGCCATGATTTTAGGCTTATAAATCAGGTAGCCCATGAGATATGGGTGTGTGCAGATCAAACTGTGACTAAGTGGGAGGGTGACATTATGGATTTCAAGCAGCATCTCAGATCAAAGGCCGGTTTATCTGACTGA 1896 0.4483 MRKKLRIRSLSFSHILNSSLISFLSSLLGSPRLKMVSDASKKKAAQKKAAAAAKRGGKAAAAASSKAASESQKVADKLANGIGDIEISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSSLEAVISCDEERLKLEKEAEALAAQEDGGGEALDRIYERLDAMDASTAEKRAAEILYGLGFNKKMQAKKTRDFSGGWRMRIALARALFMNPTVLLLDEPTNHLDLEACVWLEESLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKVLVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIEFGVDLDSRVALVGANGAGKSTLLKLMTGDLAPTDGMVRRHNHLRIAQYHQHLTEKLDLEMSALQYMIKEYPGNEEEKMRAAVGRFGLTGKAQVMPMKNLSDGQKSRVIFAWLAWRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQTVTKWEGDIMDFKQHLRSKAGLSD 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0403 631 FunFam Abc transporter f family member 1 105 369 - -
Glsi04g0403 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 105 345 IPR003439 GO:0005524
Glsi04g0403 631 Pfam ABC transporter 316 392 IPR032781 -
Glsi04g0403 631 FunFam ATP-binding cassette sub-family F member 3 376 630 - -
Glsi04g0403 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 416 631 IPR003439 GO:0005524
Glsi04g0403 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 352 IPR027417 -
Glsi04g0403 631 Coils Coil 323 343 - -
Glsi04g0403 631 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 48 626 - -
Glsi04g0403 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 610 IPR027417 -
Glsi04g0403 631 CDD ABCF_EF-3 416 608 - -
Glsi04g0403 631 ProSitePatterns ABC transporters family signature. 249 263 IPR017871 GO:0005524|GO:0016887
Glsi04g0403 631 Pfam ABC transporter 123 277 IPR003439 GO:0005524
Glsi04g0403 631 Gene3D - 105 369 IPR027417 -
Glsi04g0403 631 SMART AAA_5 129 331 IPR003593 GO:0016887
Glsi04g0403 631 SMART AAA_5 441 627 IPR003593 GO:0016887
Glsi04g0403 631 Pfam ABC transporter 432 563 IPR003439 GO:0005524
Glsi04g0403 631 CDD ABCF_EF-3 105 322 - -
Glsi04g0403 631 Gene3D - 385 628 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0403 Glsi-ChrGlsi04 2638610 2646486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0403 416 611 Calmodulin-binding Proteins AT2G36910 26.872 6.20e-09 57.4