Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0379 ATGGCTCTCAAATCAGTATCAAGACACTTCAGATACCTAGAAAATGCTATCTCTGATGAGCTTAAGCGTGTAAGAGCAATTTTGGGAGTAGATTGGGCAGCATCCTCCATTGGTACTAGTAGCAAATTTGACAGCTATATCGTGGCAAGGCTAAAATACTTGGACCAAAGATCCCAAAAGAATCAAATTTCTGATGGTAATACGGGTTTTCGTGAAAGCCAACAACACGCCTGGAGGCCGTCGAAAGGCTTACCAGAACGTTCAGTGGCAATTCTTAGAGCTTGGTTATTTGAGCATTTTCTTCATCCGTATGTCTATGTCCTCTCTGTCTCTCTGTACCCCACGGACATTGATAAACAACTATTGGCTACTCAAACAGGTCTATCACGAAACCAGGTATCGAATTGGTTCATAAATGCTCGAGTCCGTGTTTGGAGGCCAATGGTTGAGGAGATACACATGCTTGAAGCGAAAGGGTTGCTGGGTTCTAATCAGAACTCTAGTAAGAATGAGGGAACGTCTGCTACGGAAGGTGCCAATCAGAACAGTAGTAAGCATGAGGGAATTTCTGCCATTGAAGGTGTCAGCCAGTCTAGAGTTGATCAACCTCACAGCAAGTTTGGTATGCGTTCAATCCCTGACAAGCAATTTCAGTGTTTGGAAATGGGTTTCGTGGACTGTAATGGGGAGGTAGGGGAGTTACATGCAGAACTAGGGAATCAAGAGAAACGGTCTAAACTGGAATGTCAGGTAACATCAAGCATGGATGGGACATTAATGGGTTTTGTGCCATACAGACGGGGTAAGCACGAGGTTGGGGGACTTGGACCTGTGTCACTGACGTTGGGTCTCAGGCATGGCGTTGAAGGGGCACAAAACCAGCAACAACAATTACAAGAGCAGCATCAGCTTAGACGTCATTTTGGAGGGCAAATGACCAATGATTTTGTTGGCTAA 957 0.4504 MALKSVSRHFRYLENAISDELKRVRAILGVDWAASSIGTSSKFDSYIVARLKYLDQRSQKNQISDGNTGFRESQQHAWRPSKGLPERSVAILRAWLFEHFLHPYVYVLSVSLYPTDIDKQLLATQTGLSRNQVSNWFINARVRVWRPMVEEIHMLEAKGLLGSNQNSSKNEGTSATEGANQNSSKHEGISAIEGVSQSRVDQPHSKFGMRSIPDKQFQCLEMGFVDCNGEVGELHAELGNQEKRSKLECQVTSSMDGTLMGFVPYRRGKHEVGGLGPVSLTLGLRHGVEGAQNQQQQLQEQHQLRRHFGGQMTNDFVG 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0379 318 ProSiteProfiles 'Homeobox' domain profile. 113 147 IPR001356 GO:0003677
Glsi04g0379 318 MobiDBLite consensus disorder prediction 162 188 - -
Glsi04g0379 318 CDD homeodomain 78 148 IPR001356 GO:0003677
Glsi04g0379 318 SMART HOX_1 78 151 IPR001356 GO:0003677
Glsi04g0379 318 SUPERFAMILY Homeodomain-like 84 153 IPR009057 -
Glsi04g0379 318 Gene3D - 82 152 - -
Glsi04g0379 318 Pfam Homeobox KN domain 113 143 IPR008422 GO:0003677|GO:0006355
Glsi04g0379 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0379 Glsi-ChrGlsi04 2477764 2479198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0379 1 176 Homeobox Transcription Factor Family AT5G02030 48.603 8.34e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi04g0379 Homeobox_KN 7.3e-12 CL0123