Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0376 ATGTTTAGCAGAGCCAGAGATACAGCTCCTCTTCCATTCTACTCTTTCAAACAATTCATCTCTTCCATCATGACTTATCTCTGGTTTCTTGCCTTCATGTGCATAAGTTCAAGTTCTGCTCAGCAGTTCTACGACCCTTCAAATTGTTCTAAACAAGACAGCTACGTCCCAGGGTCAAGGTACACTTGCAATTTATTCCAGGAATCATGTAGTACATTCGTGGTGTTCAGAGCAAACCAAGCTTTTCATAACATTTCAGATATCTCAAAGTTCTTCCACATGAACTCTGACGAGGTAAATCAGATAAACAATCTCTCATCTTCTGCGTTCCTCAAACCAGGTAAAGAGGTTCTTCTTCCAGTCACCTGTTCGTGCTCTGGCCAGTTTTATCAAGCCAATTTCAGCTATGAAGTCCCCGAAAATACGACATTTTCAGAGATTGCTTGTGGGGTTTTTGAAGGGCTTCTGAAATCTGTCACACTCACAGAGGAAAACCTTCAACAAGAAGATAAGATCAAAGCTGGTTCTGAGCTTCATGTACCTCTTAGATGCGCATGTCCTGACAATTTCACCAGTACTAGTAACAAGGTGAAGTACCTTGTAACATACCCTGTAATGGAAGGAGATGAACCAAGTATAATTAGTGAGAAGTTTGGCATCTCATCTGAAGATTTCTTGGCAGTGAATAACTTGGATCAGTTCACAACTCTATTTCCAGAGACAACTGTTTTGATTCCATTAAGGGTTGACCGAATCACGCTTTTTGATATTCCAGATTCTCCCCCACCTCCCCCTTCTGGTTTTCTTCCCACACTTCCAGTGGCAAAGTCACAAAGAGCCACAAAACCCATAAACTGGTATGCTGCAGGATCTGTTATAGCATTTTTGCTGCTATTCTTCGCAATGATTGTAAGCGGATTGTACATGAAGGCTTTAAGGAAATGGAAAAGTGAAAATGTTCAGTCCTTCACAGCTCCAAACTCCATCGCCCTGTGCTCCCCAGTGAGGGGCTCTCCTCTATCTGCACAAACGGGTAGAAGCTCCCCAGCTTCATGTTTATCTCCAGATCTTCTCCTTGGAATAAAGTACTGTTTACTCAATTACAGCATAGAAGAGCTCAGAAAGGCCACAAAAGAGTTCAGTGAAGAAACCCAGATTAGTGGTTCAGTCTATAAAGGGTTAATCAATAATCTTGAGGTGATGATCAAGAGGATGAGGTTTGAAGACACACGCAGGGTAATTGATTTACATTCTAAAATCAATCACATCAATATTGTGAACTTACTTGGTGTTTGTTACGGTGAGAGTGATTTTTCATGGTCTTATTTAGTTTTTGAGTGGCCTAAAAATGGCTGCTTAAGGGACTGTTTGGCTAATCCATGCAAACCCTTTTACTGGAGTAGACGAACACAAATAGCTTTTGACATAGCAAAAGGTCTTCACTATTTACACTGCTGTGCTTTTCCTTCCTATGCTCATTTGAACGTGATGAGCAGTAGAAATATATTCATAACAGCAGAGTGGAGGGGGAAACTTGCAGAAATTGGCATGACTTCTGCTGTGAAACATGCCAAGGGAGATGATGATGTTAATGCAGAAAATCATAAAGGATGGGTTGCACCAGAGTACCTTGTGCATGGCTCAGTTTCTGAGAAGGTAGACATTTTTGCATTTGGGGTTGTCTTGCTTGAACTGATCTCTGCAAGAGACAACATTGATGGGAAATTAGTCATAGATTCAATTGGATTTTTGGGAGGGAGAGGAGCCAATGAAGGGGGTTGTTTTGAAGAGTTGAGGAGTTTCATGGATCCTAGTCTGAAGGATAATTATCCTCTCGCAGAGGCTCTGTGTTTGGCTGTTTTGGCTAAGGCTTGTGTGGCAGATGATCCACTGCATAGGCCTACTATGGATGATATCATGAAAGTCCTTGCCAAAATGGTTTGGCCGCAATCAGGAAAATAA 1962 0.4164 MFSRARDTAPLPFYSFKQFISSIMTYLWFLAFMCISSSSAQQFYDPSNCSKQDSYVPGSRYTCNLFQESCSTFVVFRANQAFHNISDISKFFHMNSDEVNQINNLSSSAFLKPGKEVLLPVTCSCSGQFYQANFSYEVPENTTFSEIACGVFEGLLKSVTLTEENLQQEDKIKAGSELHVPLRCACPDNFTSTSNKVKYLVTYPVMEGDEPSIISEKFGISSEDFLAVNNLDQFTTLFPETTVLIPLRVDRITLFDIPDSPPPPPSGFLPTLPVAKSQRATKPINWYAAGSVIAFLLLFFAMIVSGLYMKALRKWKSENVQSFTAPNSIALCSPVRGSPLSAQTGRSSPASCLSPDLLLGIKYCLLNYSIEELRKATKEFSEETQISGSVYKGLINNLEVMIKRMRFEDTRRVIDLHSKINHINIVNLLGVCYGESDFSWSYLVFEWPKNGCLRDCLANPCKPFYWSRRTQIAFDIAKGLHYLHCCAFPSYAHLNVMSSRNIFITAEWRGKLAEIGMTSAVKHAKGDDDVNAENHKGWVAPEYLVHGSVSEKVDIFAFGVVLLELISARDNIDGKLVIDSIGFLGGRGANEGGCFEELRSFMDPSLKDNYPLAEALCLAVLAKACVADDPLHRPTMDDIMKVLAKMVWPQSGK 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0376 653 Pfam Protein tyrosine and serine/threonine kinase 389 641 IPR001245 GO:0004672|GO:0006468
Glsi04g0376 653 ProSiteProfiles Protein kinase domain profile. 297 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0376 653 Gene3D Transferase(Phosphotransferase) domain 1 449 650 - -
Glsi04g0376 653 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 27 647 - -
Glsi04g0376 653 Gene3D LysM domain 187 251 IPR036779 -
Glsi04g0376 653 ProSiteProfiles LysM domain profile. 201 245 IPR018392 -
Glsi04g0376 653 Gene3D Phosphorylase Kinase; domain 1 360 447 - -
Glsi04g0376 653 CDD LysM 201 245 IPR018392 -
Glsi04g0376 653 SUPERFAMILY Protein kinase-like (PK-like) 363 646 IPR011009 -
Glsi04g0376 653 Pfam LysM domain 205 246 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0376 Glsi-ChrGlsi04 2453952 2455913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0376 29 651 Receptor kinase-like Gene Family AT2G23770 31.061 1.92e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi04g0376 PK_Tyr_Ser-Thr 2.1e-25 CL0016