LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g0372	ATGCCAAAACCCCATTCTACTCATAGTAAGCTCACTGAATCTTTCCCATTTCCAAGTTATAACGGCTGCATTTCTCATGGAATTACTCGTATTAGCAGATCTAAGTGTTCATCGGAAATACCTAAATTCTACAAATTCTTGAGACACAAACATGCCGATCAGCGGAGAACCATTGTTCTCTATCCTCCTTATCCGTTGTCATTTGTCTCTTTGGCGTTGGCCTTGGATTGGGCTCGTTGCTCTCAATCTTGGATTAACAAAATATTAATGTCGGGGTTTTGCCTTGTTCCATATCGTCAGCCCCCAGTCCAAGTAGCTCTTGCTTTTGTTGTTAGCTTGCTCTTGATTCGGCACTCACTTTGTGATGAACCTTCTGATACTTCTGGCCTTAGCAAATGGAAATGTAAATGTTCTTTCCAAGGGAACCGGAGCTCTGTTGGTAATTGTTCTACATCATGTGATTGCAATTCAGACACTGAAGAGAGTGGATCCATTTGGACATGCATATGTGATCCCAATGGGTTTCCTAAAGTGGCAGTAGATGGCCGTAATCCTAATTGCTTTACAGCCTGCAACTGCACCTGGGGAACTCTCAGCATGTCACCAGGTTCAAAGAAACACATTTCCAGCAAGATTGTTGTTTCTATACTATTAGTATGTGTTATATGTACAACTATTGCATTTATTGCCTCGTTCACATGCTATATCTGCCGGAGGGACCAATGCCCTATTCAACCACCGATACTCTCATCAGAAAAGGAAACAAGCTGCAATAGTACCACCAACTTAATTAGTTATAGGACTTCTTCAATGCCAGAAACAAAAGTTACCATAAATTCTCCTATTAATCATATTACAGGTTGCTTTCAGAAGGCCTCTTCCTTGTTTGGGAGCCGAACAGAAACTTTTCATGCCAAAATTATTCAATTTTCTTTTGCTGAACTGGACAATGCGACTGAAAAATTTTCAGCTTCCAACCTTGTTGGACTAGGTGGAAGTAGCTATGTATATCGTGGTCGGTTGAAAGATGGCAGTAACGTGGCAATTAAGCGACTAAAATCTCAAGAAGGGCCTGAAGCAGACTCTGCATTTTTGACAGAGATTGAACTATTATCTAGACTCCATCATTGTCATCTTGTGCCTTTGCTTGGATACTGCTCAGAACTTAAAGGGAAACACGTTGAGAGGCTACTAGTATTTGAGTACATGACTAATGGCAATTTGAGGGACTGTTTAGATAGAGTTTCTGGAGAAAATATGGATTGGCATACTCGTGTTACAATTGCAATAGGAGCTGCTAGAGGCTTGGAATATCTCCATGAAGCAGCTGCGCCGAGAATTCTGCACAGAGATGTCAAATCAACTAACATTCTACTGGATGAAAATTGGCAAGCAAAAATAACTGATCTTGGCATGGCTAAAAACTTGAGAGTTGATGAATTACCCAGCTGTTCCAACTCTCCAGCAAGAATGCAGGGGACGTTTGGCTATTTTGCACCTGAGTGTGCAATTTTTGGAAGAGCCTCTCTTAAGTCAGATGTCTTCAGCTTCGGGGTGGTTCTTCTTGAGCTTATGAGTGGTCGGCACCCCATCTATAAATCCACAGGCAAAGAAGAAAGCCTTGTCATATGGGCTACTCCTCGCTTAAAAGATAGTAGGCGAGTAATAACAGAGTTGGCTGATCCACAGTTGAAGGGAAACTTCCATGAAGAAGAGGTGCAGATAATGGCATATTTAGCAAAGGAGTGTTTGCTGTTAGATCCTGATACTCGGCCAACCATGAGTGAAGTTGTTCAAATTCTTTCAACTATATGGCCTGACAAATCTAGGAGGAGAAGAAACATTCCAGTGAGCCTTTTTCAGGAACCTCAGGAAGCAGAAAAGCAAAGACAAGCTCTATCCAGTAAATGTTCAGATCAAAATTCATTGCCATTAGATATTAACCACAATCATTGCGTTGGGAACAAAAATAAAGCAGCAGATACAGTTTCAGTTGAGTATATGTCGAGTTTGATCCTCTTGACTTCAAAAACTGAGAGTTGGCATGCATCTGATAATGAAACGGTAGACCTAACTGAGCCTCGGTTTGAATCATTTTGTCTAACTAACAGCAATTCCCCTTGA	2124	0.4124	MPKPHSTHSKLTESFPFPSYNGCISHGITRISRSKCSSEIPKFYKFLRHKHADQRRTIVLYPPYPLSFVSLALALDWARCSQSWINKILMSGFCLVPYRQPPVQVALAFVVSLLLIRHSLCDEPSDTSGLSKWKCKCSFQGNRSSVGNCSTSCDCNSDTEESGSIWTCICDPNGFPKVAVDGRNPNCFTACNCTWGTLSMSPGSKKHISSKIVVSILLVCVICTTIAFIASFTCYICRRDQCPIQPPILSSEKETSCNSTTNLISYRTSSMPETKVTINSPINHITGCFQKASSLFGSRTETFHAKIIQFSFAELDNATEKFSASNLVGLGGSSYVYRGRLKDGSNVAIKRLKSQEGPEADSAFLTEIELLSRLHHCHLVPLLGYCSELKGKHVERLLVFEYMTNGNLRDCLDRVSGENMDWHTRVTIAIGAARGLEYLHEAAAPRILHRDVKSTNILLDENWQAKITDLGMAKNLRVDELPSCSNSPARMQGTFGYFAPECAIFGRASLKSDVFSFGVVLLELMSGRHPIYKSTGKEESLVIWATPRLKDSRRVITELADPQLKGNFHEEEVQIMAYLAKECLLLDPDTRPTMSEVVQILSTIWPDKSRRRRNIPVSLFQEPQEAEKQRQALSSKCSDQNSLPLDINHNHCVGNKNKAADTVSVEYMSSLILLTSKTESWHASDNETVDLTEPRFESFCLTNSNSP	707

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g0372	707	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	447	459	IPR008271	GO:0004672\|GO:0006468
	Glsi04g0372	707	ProSiteProfiles	Protein kinase domain profile.	322	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g0372	707	FunFam	receptor-like serine/threonine-protein kinase NCRK	296	402	-	-
	Glsi04g0372	707	CDD	STKc_IRAK	328	601	-	-
	Glsi04g0372	707	SUPERFAMILY	Protein kinase-like (PK-like)	303	601	IPR011009	-
	Glsi04g0372	707	ProSitePatterns	Protein kinases ATP-binding region signature.	328	350	IPR017441	GO:0005524
	Glsi04g0372	707	FunFam	receptor-like serine/threonine-protein kinase NCRK	403	613	-	-
	Glsi04g0372	707	Gene3D	Transferase(Phosphotransferase) domain 1	403	619	-	-
	Glsi04g0372	707	PANTHER	OS01G0750732 PROTEIN	132	629	-	-
	Glsi04g0372	707	Pfam	Protein kinase domain	325	599	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g0372	707	Gene3D	Phosphorylase Kinase; domain 1	296	402	-	-
	Glsi04g0372	707	SMART	serkin_6	322	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g0372	Glsi-ChrGlsi04	2367700	2374382	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g0372	103	703	Receptor kinase-like Gene Family	AT2G28250	53.213	0.0	597

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XVI	Glsi04g0372		Pkinase	3.1e-44	CL0016