Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0370 ATGCCTGAGAACCTGACTCGCTTCAATTGGTGCTTGTTCCCTGTTCGTGGGAATACCGAGAAGCTGACACTTCTGAAGAACAGTATGGGCTTTGGTAATTCAAGATCTGTAAGATTTCAAGATGATCTTGAACAAGCAAAAATCCCTGCGACTAACAGTGACAACGGGATTAAGGTTAAATACAATATTGATGGAGTACAAATACCTGAGCCTAGCACCATTAAGGCTCAGACAAAGGTGACAGGGAAGACTGGAAAGTTCTTGAAAGGTAGAGTATTATCAAGAGTATTCTCAGAGGACTACGACAGAGTGAAAAGAAGAATATTAGATCCTCGAGGACAAGCCTTTCACCGCTGGAACAAGATTTTCTTGGTAGTATGTTTAATATCTTTGTTTGTGGACCCTCTGTTCTTTTATTTGCCAGTAGTTCGAGATGAAGTGTGCATTGAGATTGGAATAACTCTTGAAGTTGTCCTCACAATTATCAGAACAATGTCGGATGTCTTTTACATGGTTCAGATTTTCATGAGGTTTCGTACAGCTTATGTTGCTCCTTCCTCCCGGGTATTTGGGAGAGGAGAACTTGTTATAGAATCTTCTAAGATTGCAATTAGGTACCTGAGCAAGGGTTTCTGGTTAGACTTCATTGCTGCCCTGCCACTTCCTCAGGTGTTAATTTGGACTGTCATCCCCAATCTAAGGGGTTCCACCATGACAAACACAAAAAATGTCCTTCGGTTTATCATCATTTTCCAATATATACCAAGGCTATTTCTGATTTTTCCGCTTTCATCGCAAATTGTAAAGGCTGCAGGGGTTGTGACAGAAACAGCATGGGCTGGGGCTGCTTACAACCTGATGCTTTACATGTTGGCAAGCCATGTTTTAGGAGCTTGTTGGTACCTTCTATCAGTTGAACGACAAGAAGCGTGCTGGAGAAGTGCGTGCGATTTGGAAAAGTCATCTTGCCAATATGGATTCTTTGATTGCCACAGGGTTAAAGAAGCCCGCAGGGTCTCCTGGTTCGTAACAAGTAATGTCACAAATGTATGCTCACCAGATGTTAACTTTTATCAGTTTGGCATGTACGGTGATGCGGTGACATCTGAAGTTACAAGCTCGCCATTCTTTAACAAGTATTTCTTCTGTCTCTGGTGGGGCCTAAGGAATCTGAGTTCGTTGGGACAGGGTCTTCTCACCAGCACTTTTGTTGGAGAAATAATGTTTGCCATTATTGTTGCAACCCTTGGATTGGTTCTTTTTGCATTGCTTATTGGTAATATGCAGACATACCTCCAATCAACAACTGTCCGCTTAGAAGAGTGGAGGGTCAAAAGAACTGATACAGAACAATGGATGCGTCACAGGCAGCTACCTCCAGAACTGAGACAATCTGTGCGGAAATATGATCAATATAAATGGTTGGCTACACGAGGAGTAGATGAAGAGGCTCTTCTCAAAGGCCTTCCGGTGGATCTTCGGAGAGACATCAAGCGCCATCTTTGCCTTGACCTTGTCCGAGGAGTTCCGTTGTTTGACCAAATGGATGAGAGGATGCTAGACGCAATATGTGAAAGGCTGAAGCCTGCATTGTGCACAGAGGGCACCTACCTAGTTCGTGAGGGCGATCCAGTGAATGAGATGCTCTTCATAATACGAGGCCATCTAGATTCTTACACCACAAACGGAGGCCGTACTGGCTTCTTCAATTCATGCCGTATTGGTCCCGGGGATTTCTGTGGTGAGGAACTATTGACATGGGCTTTGGACCCTCGACCAAGTGTCATACTTCCATCGTCCACAAGAACAGTGAAGGCCATCTCCGAAGTAGAGGCGTTTGCCCTCATAGCAGAGGACCTCAAGTTTGTTGCATCTCAATTTAGAAGACTACACAGTAAGCAACTTAGACACAAATTCAGGTTTTACTCACACCAATGGCGAACATGGGCTGCTTGTTTCATACAAGCTGCATGGAGAAGATATAAGAAAAGGAAGGAAGTTGCTGAACTGAGGACGAAGATGAATCCTACAGTTGCTGAGCCTGAAACACCAACTTCTGGTTCAGGCTTAGGTGTAGATGCAACAAGGCTGGTGAGGAGCACTAGAAAAGGTGTCAATATGCACTCTGGGACAGATTCTGGAGTTGTAAGCTCTTTGCAGAAACCTGCAGAACCAGATTTTTCTGTGGATGAGCAATAA 2199 0.4411 MPENLTRFNWCLFPVRGNTEKLTLLKNSMGFGNSRSVRFQDDLEQAKIPATNSDNGIKVKYNIDGVQIPEPSTIKAQTKVTGKTGKFLKGRVLSRVFSEDYDRVKRRILDPRGQAFHRWNKIFLVVCLISLFVDPLFFYLPVVRDEVCIEIGITLEVVLTIIRTMSDVFYMVQIFMRFRTAYVAPSSRVFGRGELVIESSKIAIRYLSKGFWLDFIAALPLPQVLIWTVIPNLRGSTMTNTKNVLRFIIIFQYIPRLFLIFPLSSQIVKAAGVVTETAWAGAAYNLMLYMLASHVLGACWYLLSVERQEACWRSACDLEKSSCQYGFFDCHRVKEARRVSWFVTSNVTNVCSPDVNFYQFGMYGDAVTSEVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMFAIIVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMRHRQLPPELRQSVRKYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRYKKRKEVAELRTKMNPTVAEPETPTSGSGLGVDATRLVRSTRKGVNMHSGTDSGVVSSLQKPAEPDFSVDEQ 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0370 732 Pfam Ion transport protein 119 438 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi04g0370 732 MobiDBLite consensus disorder prediction 701 732 - -
Glsi04g0370 732 FunFam Cyclic nucleotide-gated ion channel 1 509 627 - -
Glsi04g0370 732 SUPERFAMILY Voltage-gated potassium channels 110 433 - -
Glsi04g0370 732 CDD CAP_ED 511 642 IPR000595 -
Glsi04g0370 732 Gene3D - 116 435 - -
Glsi04g0370 732 Gene3D Helix hairpin bin 439 502 - -
Glsi04g0370 732 Gene3D Jelly Rolls 509 629 IPR014710 -
Glsi04g0370 732 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 96 727 - -
Glsi04g0370 732 MobiDBLite consensus disorder prediction 702 718 - -
Glsi04g0370 732 ProSiteProfiles IQ motif profile. 647 676 IPR000048 GO:0005515
Glsi04g0370 732 ProSiteProfiles cAMP/cGMP binding motif profile. 511 608 IPR000595 -
Glsi04g0370 732 SUPERFAMILY cAMP-binding domain-like 441 637 IPR018490 -
Glsi04g0370 732 Pfam Cyclic nucleotide-binding domain 534 621 IPR000595 -
Glsi04g0370 732 PRINTS EAG/ELK/ERG potassium channel family signature 380 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi04g0370 732 PRINTS EAG/ELK/ERG potassium channel family signature 474 481 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi04g0370 732 PRINTS EAG/ELK/ERG potassium channel family signature 174 183 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi04g0370 732 PRINTS EAG/ELK/ERG potassium channel family signature 424 433 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi04g0370 732 PRINTS EAG/ELK/ERG potassium channel family signature 291 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi04g0370 732 PRINTS EAG/ELK/ERG potassium channel family signature 406 417 IPR003938 GO:0005249|GO:0006813|GO:0016020
Glsi04g0370 732 SMART cnmp_10 511 642 IPR000595 -
Glsi04g0370 732 FunFam Cyclic nucleotide-gated ion channel 1 438 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0370 Glsi-ChrGlsi04 2354096 2359188 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0370 85 730 Ion Channels AT2G28260 77.090 0.0 1038