Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0362 ATGAAGGAAGTTGAGAAGAGCTTGGATCCACAACTATGGCATGCGTGCGCCGGCGGTATGGTTCAGATGCCTCCGTTGAACTCCAAAGTTTTCTACTTCCCTCAAGGGCACGCCGAGCACGCCCAGGCTAACGTTGATTTTGCAGCCTCCTTGCGGATTCCACCGCTCATTCTTTGCCGAGTGGCAGCAGTGAAATTCCTGGCAGACACAGAAACCGATGAAGTCTATTGTAAGATCAAGCTGATTCCTTTGAGAAATTCTGAGCTAGATTACGACGTTGACGGGGTTGGGGAGGGTAACGAATCTGAGAATTCAGAGAAACCAGCGTCTTTTGCCAAGACCTTAACCCAATCTGACGCGAACAATGGTGGAGGCTTCTCAGTTCCAAGATACTGTGCAGAAACTATATTTCCACGGCTGGATTACTCAGCCGAGCCTCCGGTTCAAACGGTGATTGCCAAGGACGTTCATGGTGAAATCTGGAAATTCAGGCACATATACAGAGGAACACCCCGTCGGCACTTACTAACAACTGGTTGGAGCACTTTCGTGAACCAGAAGAAACTTGTTGCAGGGGACTCTGTCGTGTTTCTGAGGGCTGAAAATGGGGATCTCTGCGTAGGAATTCGCCGAGCAAAGCGGGGAATCGGGGGCGGATCAGAGGTGCCGTCTGGGTGGAGCTCTAGTCCTGGAAACTCTGTGGGACCTTATGGGGCTTTCACTGTTTTCTTGAGGGAGGAGAACAAGCTATTGCGAAATGGTTGTGGGAATTCAAATCCTGGCAGCAATTTGAGTGGAAGAGGAAGAGTGAGACCTGAATCCATCATGGAAGCTGTGACTCTGGCTTCAAACGGTCAGCCATTTGAAGTTGTTTATTACCCACGAGCAAGCACTCCAGAGTTCTGCATCAAGGCTGCGGCCGTAAGGACATCAATGAGAATTCAATGGTGCTCTGGGATGAGGTTCAAGATGGCCTTTGAGACAGAGGATTCTTCCCGGATTAGCTGGTTCATGGGGACTATTGCTTCTGTTCAGGTTGTTGATCCTATCCGCTGGCCTAATTCGCCCTGGCGACTTCTTCAGGTTACTTGGGATGAGCCAGATTTGCTACACAATGTGAAGCGTGTTAGCCCATGGTTGGTTGAACTAGTATCAAACAGGCCAGTCATCCATCTCACACCCTTCGCGCCCCCTCGGAAGAAGTTGCGGCTTCCTCAACACCCAGATTTCCCCCTCGATGCTCAATTCACGATACCAACCTTCCCAGGCAACCCCCTTGGGCCCAGCAGCCCCTTGTGTTGTCTATCCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTCTTTCAGATCTCCACCTTCACAATAAACTGCAGTTGGGGCTGCTTTCAACTAATTTCCACCAGCTTGATGCACATCCTCGGATTTCTAACAGCAGTATAACAAGCCTTGATAAGAAAAATGAAAGCTTGTCATGCTTGCTCACGATGGGAAATTCTGACAAGAGTTTGGAGAAATCTGATAATGTGAAGAGACACCAGTTTTTGCTCTTCGGTCAACCAATACTGACTGAGCAACAAATTTCTCGAAGCTGTCCTAGTGATGACAATAAGGATAAAGAAAAGTGCAATTTTGGTGATTCTCAATCTGCACTTTCGCAGCCGTTTTCACCAGGAATATCTTCTGCTGCTGAGTTTTCTTGGCAACTTGGTTTGGATACTGGTCATTGCAAGGTTTTCATGGAGTCCGAAGATGTGGGACGGACTCTAGACCTATCGTGTATTGGTTCTTATGAAGAGCTATACAGGAAACTGGCCAACATGTTTGGAATAGAAAGATCTGAGATGTTGAGCCACGTGCTCTACCGTGACGCCGCAGGTGCTGTTAAAAAAACTGGAGAAGAACCCTTCAGTGACTTTATGAAAACAGCAAAAAGATTGACAATTCTGACAGATTCTGGCAGCAAAGATATTAGAAGGGCATGGATGACAGGATCTCGAAATGGATTGGACGCATCAAACAAGACAGGTCCTCTGAGCATATTTGCCTAA 2070 0.4783 MKEVEKSLDPQLWHACAGGMVQMPPLNSKVFYFPQGHAEHAQANVDFAASLRIPPLILCRVAAVKFLADTETDEVYCKIKLIPLRNSELDYDVDGVGEGNESENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGDLCVGIRRAKRGIGGGSEVPSGWSSSPGNSVGPYGAFTVFLREENKLLRNGCGNSNPGSNLSGRGRVRPESIMEAVTLASNGQPFEVVYYPRASTPEFCIKAAAVRTSMRIQWCSGMRFKMAFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNRPVIHLTPFAPPRKKLRLPQHPDFPLDAQFTIPTFPGNPLGPSSPLCCLSDNAPAGIQGARHAQFGISLSDLHLHNKLQLGLLSTNFHQLDAHPRISNSSITSLDKKNESLSCLLTMGNSDKSLEKSDNVKRHQFLLFGQPILTEQQISRSCPSDDNKDKEKCNFGDSQSALSQPFSPGISSAAEFSWQLGLDTGHCKVFMESEDVGRTLDLSCIGSYEELYRKLANMFGIERSEMLSHVLYRDAAGAVKKTGEEPFSDFMKTAKRLTILTDSGSKDIRRAWMTGSRNGLDASNKTGPLSIFA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0362 689 Gene3D - 316 388 - -
Glsi04g0362 689 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Glsi04g0362 689 Gene3D - 109 213 IPR015300 -
Glsi04g0362 689 FunFam Auxin response factor 316 389 - -
Glsi04g0362 689 SUPERFAMILY DNA-binding pseudobarrel domain 106 217 IPR015300 -
Glsi04g0362 689 Gene3D - 579 664 - -
Glsi04g0362 689 ProSiteProfiles PB1 domain profile. 580 660 IPR000270 GO:0005515
Glsi04g0362 689 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Glsi04g0362 689 MobiDBLite consensus disorder prediction 535 562 - -
Glsi04g0362 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 659 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi04g0362 689 SMART B3_2 111 213 IPR003340 GO:0003677
Glsi04g0362 689 CDD B3_DNA 110 211 IPR003340 GO:0003677
Glsi04g0362 689 FunFam Auxin response factor 109 213 - -
Glsi04g0362 689 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0362 Glsi-ChrGlsi04 2292286 2295295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0362 4 664 B3 DNA Binding Superfamily AT4G30080 61.095 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi04g0362 B3 1.7e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1693 14 17335007 17337386 Glsi04g0362 04 2292286 2295295 CCT