Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0357 ATGGCGATGGCTGTGGCTCAGCACAGAGAAAGCAGCAGTGGGAGCATTAACAAGCACCTTGATTCCGGGAAATATGTCCGATACACGGCGGAGCAGGTTGAGGCGCTCGAACGAGTTTATGCTGAATGCCCCAAGCCCAGCTCCTTGCGAAGGCAACAATTGATCCGAGAGTGCCCTATTCTTTCTAACATCGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGGTGTAGAGAGAAGCAGAGAAAGGAGGCAGGACGGCTTCAGACCGTGAATAGGAAACTGACAGCAATGAACAAGTTGTTGATGGAGGAAAATGATCGACTGCAGAAACAAGTGTCACAACTAGTATGCGAGAATGGATTTATGCGGCAGCAATTGCAAACTGCATCAGCAGCAACTACGGATGCAAGTTGTGATTCGGTGGTTACCACACCTCAGCACTCTTTAAGAGATGCTAGTAACCCTGCTGGACTCCTATCAATTGCAGAGGAGACCTTGGCGGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGCGGTCTTGTCAGTTTAGAACCTACAAAGATTGCAGAGATCCTGAAAGATCGTCCATCTTGGTTTCGGGATTGTCGGAGCCTAGCAGTTTTCACAATGTTACCTGCTGGAAATGGTGGAACAATTGAACTTATTTACACACAGACATATGCTCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATACACTACTAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTGTCTGGTTCAGGTGCTGGCCCTAATGCAGCAGCTGCTGCTCAGTTTGTGAGAGCTGAAACGCTTCCCAGTGGCTACTTGATTCGACCATGCGAAGGTGGAGGATCAATCATCCACATTGTTGACCACCTAAATCTTGAGGCATGGAGTGTGCCAGAGGTGCTGCGACCACTTTATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCAGCACTACGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTTTATGGTTTGGGTAGGCAGCCTGCTGTTCTTCGAACTTTCAGCCAAAGGCTGAGCAGGGGCTTCAATGATGCTGTCAATGGATTTAATGACGATGGCTGGTCCGTAATGAATGGTGATGGTGCTGACGATGTAATTATTGCGGTCAACTCAACTAAGAATCTGAGTGCCACTTCTAATCCATCAAGTTCCCTATCATTCCTTGGAGGAGTCCTCTGTGCAAAGGCTTCCATGTTGCTCCAAAATGTACCTCCTGCAGTTTTGGTTCGATTTCTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGCTCCTTGTCCTATCCTGGAATGAGGCCCACAAGGTTCACTGGAAGTCAAATTATCATGCCTCTTGGCCATACAATTGAACATGAAGAGATGCTTGAAGTTATTCGTCTTGAAGGTCACTCTCTCGCACAGGAAGATGCTTTTGTTTCTAGGGACATTCATCTCTTACAGATATGTAGTGGGATTGATGAGAATGCAGTGGGGCCATGTTCAGAGCTCATATTTGCTTCAATTGACGAAATGTTCCCAGATGATGCTCCATTACTGCCTTCTGGTTTCCGCATCATCCCGTTGGATTCAAAACCAGGTGATAAGAAGGATGCAGTGTCTACAAATCGGACCCTAGATTTGATATCTGGTCATGAAGTGGGTCCAGCAACAAATCATGCTGCAGGAGATGCATCATCAAGTCATAGCACACGATCAGTGTTGACTATTGCCTTCCAGTTTCCTTTTGACAGCAGTTTGCAGGAAAATGTTGCAATTATGGCACGACAGTATGTCCGTAGTGTGATTTCATCTGTGCAGAGGGTTGCCATGGCTATATCTCCATCTGGTATAAATCCACCTGTTGTACCAAAACTCTGTCCTGGCTCTCCAGAAGCTCTTACTCTTGCTCACTGGATATGCCAGAGTTATAGTTACCATCTGGGGGCAGAATTACTGAAATCTGATTCTCTTGTTGGTGATGTGCTGCTGAAACATTTATGGCATCATCAGGATGCCGTTTTGTGCTGTTCATTGAGGTCATTGCCAGTGTTCATCTTTGCAAACCAGGCAGGGCTTGACATGCTGGAAACAACTCTAGTGGCTTTACAAGATATCACATTGGATAAAATATTTGATGAGTCTGGACGCAAGTCATTGTGTGCAGACTTTACCAAGTTAATGCAGGAGGGATTTGCTTATCTGCCAGCTGGAATCTGCATGTCCACGATGGGGAGGCATGTTTCCTATGAGCAAGCCATCGCATGGAAAGTGCTTGCAGAAGATAACACTGTTCATTGCTTAGCTTTCTCTTTCATAAATTGGTCATTTGTATGA 2526 0.4652 MAMAVAQHRESSSGSINKHLDSGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAGRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQTASAATTDASCDSVVTTPQHSLRDASNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLAVFTMLPAGNGGTIELIYTQTYAPTTLAPARDFWTLRYTTSLDNGSLVVCERSLSGSGAGPNAAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVMNGDGADDVIIAVNSTKNLSATSNPSSSLSFLGGVLCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGSLSYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGPCSELIFASIDEMFPDDAPLLPSGFRIIPLDSKPGDKKDAVSTNRTLDLISGHEVGPATNHAAGDASSSHSTRSVLTIAFQFPFDSSLQENVAIMARQYVRSVISSVQRVAMAISPSGINPPVVPKLCPGSPEALTLAHWICQSYSYHLGAELLKSDSLVGDVLLKHLWHHQDAVLCCSLRSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKSLCADFTKLMQEGFAYLPAGICMSTMGRHVSYEQAIAWKVLAEDNTVHCLAFSFINWSFV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0357 841 CDD bZIP 76 115 - -
Glsi04g0357 841 SMART START_1 162 372 IPR002913 GO:0008289
Glsi04g0357 841 SUPERFAMILY Homeodomain-like 22 86 IPR009057 -
Glsi04g0357 841 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Glsi04g0357 841 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Glsi04g0357 841 SMART HOX_1 21 87 IPR001356 GO:0003677
Glsi04g0357 841 FunFam Homeobox-leucine zipper protein REVOLUTA 24 79 - -
Glsi04g0357 841 SUPERFAMILY Bet v1-like 162 374 - -
Glsi04g0357 841 Gene3D - 197 379 IPR023393 -
Glsi04g0357 841 ProSiteProfiles START domain profile. 153 381 IPR002913 GO:0008289
Glsi04g0357 841 Pfam START domain 163 370 IPR002913 GO:0008289
Glsi04g0357 841 Gene3D - 17 88 - -
Glsi04g0357 841 Coils Coil 93 120 - -
Glsi04g0357 841 CDD homeodomain 24 84 IPR001356 GO:0003677
Glsi04g0357 841 Pfam MEKHLA domain 698 840 IPR013978 -
Glsi04g0357 841 CDD START_ArGLABRA2_like 157 373 - -
Glsi04g0357 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 841 IPR044830 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0357 Glsi-ChrGlsi04 2258210 2264126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0357 1 841 Homeobox Transcription Factor Family AT5G60690 82.665 0.0 1448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi04g0357 START 7.6e-49 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0357 04 2258210 2264126 Glsi04g0357 04 2258210 2264126 ECH