Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0349 ATGACGAAAGACGTGGAGGTAACAGAGCAAGGAGAGTTCTCGGCGAAAGACTACCAGGACCCACCACCGGTGCCGTTGATCGATGTGGAGGAGCTGACCAAGTGGTCCCTTTACAGAGCCCTCATAGCGGAGTTCATAGCAACCCTTCTCTTCCTTTACATCACGGTGTTGACCATTATTGGCTACAACAGCCAGACCGACACTAAAAAGGGTGGCACTGACTGTGATGGCGTTGGCATTCTTGGTATCGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAACCCGGCGGTGACATTCGGGCTGTTCCTGGGACGGAAGTTGTCGCTGATACGGGCGTTGTTGTACATGGTAGCACAGTGCGCGGGGGCAATCTGCGGTGCTGGACTCGCCAAGGCCTTCCAAAAATCCTACTACGACAGGTACGGAGGTGGGGCCAACTCCGTCGCTGTTGGCTACAACAAGGGTACCGCTTTGGGTGCTGAGATTATCGGTACCTTCGTCCTCGTCTACACTGTCTTCTCTGCCACAGATCCTAAGAGGAATGCTCGAGACTCCCATGTTCCTGTATTAGCACCACTGCCCATTGGATTTGCCGTGTTCATGGTTCACTTGGCTACCATCCCAATCACCGGTACCGGCATTAACCCAGCAAGAAGTTTCGGTGCAGCTGTAATCTTCAACAAAGAAAAAATCTGGGACGATCAGTGGATATTCTGGGTTGGACCATTTATTGGAGCTGCCGTAGCTGCAATCTACCACCAATACATTCTTAGAGCTACGGCTATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA 858 0.5186 MTKDVEVTEQGEFSAKDYQDPPPVPLIDVEELTKWSLYRALIAEFIATLLFLYITVLTIIGYNSQTDTKKGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKLSLIRALLYMVAQCAGAICGAGLAKAFQKSYYDRYGGGANSVAVGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKIWDDQWIFWVGPFIGAAVAAIYHQYILRATAIKALGSFRSNA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0349 285 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Glsi04g0349 285 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 FunFam Probable aquaporin PIP1-2 24 285 - -
Glsi04g0349 285 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Glsi04g0349 285 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi04g0349 285 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Glsi04g0349 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 274 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0349 Glsi-ChrGlsi04 2217145 2218627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0349 1 285 Major Intrinsic Protein MIP AT2G37170 82.456 4.16e-176 487