Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0346 ATGTTAAGGGTAGGAGAGAGAGTGACAGCGGAAGTAGGAGCCTTTTTGAGCATTATGGCAGAAGGGTTTTGGCATGTGACTTCTCTATCAATGTGCCAATTGGTCATTGCTTGTGGCCTCCTCTCTCATGTGACCTTTTCTCTTGTGCTTCATCCCACTGCTTCTTTCGCTTTTATTCAGTACTACACCATGGACAACACATTTTTCAGCCATGTAAACTCACTCTCCCATCTCTCCCTGTTCTTATTGTTTCCGTTAGGCCAAGTAGTTTATATTCTTACCATTAGTTCTGCATATAGTGGCTTTTTCTTGGAATATGCATCTCCCAAAGCAGTACTAGACAAAACCTGCGGTTTCGATCAGTGCTTGGCGTCTATGTTCTGGCTGGCATTTCCTCTGGGACACCATGTTTACACTTGGGAATCTTTTGGGATTTGGAAATCGATTTCTCTGTCGGGGGAATTTCGTGGGGGCCAACTATGTCCATTTCGGAAGCAGCTTTGCTATCTTACTTCTGATAACGCAAACCAGATATTGAAAGTTAAAGGTGCTGGGTTAGTATTTCCAGATGTAAGACAGTCTGGATTGATCGATGTCAAGAATCTTGAATATCATCTGTTTGAAAAAAGTCGGTACGCTTGGCAGTCCACAGCAATTCATATGAGCATAGGGAAATATCCATGTCAAAGGCAATGGGCATGCCTCAGCTGCCATGAACTAAGAGATCCAGGTGCTTTTTCTCTGGGGATAGCAGCGAAGCTAGGTGGGAATAATAATGACGTTCCAACGCTTACACCTTTGCAAGAAGATCAAGTTCACAGACCAGGAGGAATAAAGGTTGCTGCCATTGTTGGAGGTGTTGTTGCTACCTTAGTCGTGATTGTTGTCGCAGTGATTGTCTATGTCTGCTTGATGCGTGTTAAGAGATTTATGAGGCAAACATCTGAGACTGCTTCCTCTAATCCATCTCCAACTGTTGAATTGGGAATAGGCAACACCTCGCAGTATGTTGGAGCTCTCTCTCCATGTGATGCACAGAATATAAGGCAGTTCGCAATATTGGAACTAGAACAAGCTACACGAAATTTCAGTCCAAGTAATCTTGTAGGGGAAGGTAGATTTGGTTTGGTTTACAAGGGTTTGCTTCATGATGGATCTATTGTTGCTATAAAAAGGCGCCAATTTGCCCTGACACACAGTTTCATCCGTCAGGTGAGGCAAATAGCTGACATCCACCACATTCATCTTGTCAAGCTTATAGGTTACTATGAAGATAGCAATCAACAGTTACTTGTGCATGAATATCTCCCTAATGGAAATGTAGGGAATCACCTATATGACAGTGAAGGTTTACCCATTGGAAAACTAGACATGCGGCGAAGGTTATGTATTGCGTTGGGAGCTTCCAAAGGACTGGAACATCTTCACAGTTTGGTTCCTCCTTTGGTGCATACACATTTCAGAACTAGGAATGTTATTGTGGATGAGAGTTTCACTGCCAAGGTTTCTGATTATGGATTCTGCAAAATTCAAAACAACGCTGATCACGCTGGTTCATCATCAAACATAGACTGCTTTCTTGACCAAGAGTTGAATTTCTCACAGGATTTTTCAGAGAAGAGTGATGTTTACAGTTTTGGGGTCTTTTTACTAGAGATGATTAGTGGACGAGAAGCACATAATAGAAACCTATCAAACTCACAGGAGGATATGGTATTTCAGGCTAAAAACAGCGATGACTGGGACAAGTTTGTGGACATAACGCTAGGAGTCCATGAAAAGGAAGCGGCAAGAAAGGTGATGGAGTTGGCGTTGCTTCAAACGCTTTTTCCTAACTCTCGAAAGCCCAACTCACTGTCACAGACAGATCGATCTCTCTTCCTCGGCGATCAGCAGTTTAGCACGCAGAGCATAAACCCTTCCAAAATGCAACGTCGACGACTCGTCGTTGTGCTTTCGCTCACTACTCTTCTCCTCCTCTCTTCTTTCTCTCTCACATTATGCAAGTCCGTCGAAAACGATGCCGACGACGAAGATCTCAGCTTTCTCGAAGAAGCCGATGACAGCTCCACTTCCCACCACGACGACCGTTACCCAGATCTGGACCAGTTCGACGATGATTCCATCGACGACGAAGTTCTCGGGGATTTCTCCGGCTTCGACGAGTCGGATGCTGATACGGAGGCTTACAAAGAGCCCGAGGTGGATGATAAAGACGTTGCTGTATTAAGGGAGAGTAATTTCAGCGACGTTGTGAAGAAAAATCAGTTTGTAATGGTGGAATTCTACGCACCCTGGTGTGGTCACTGCCAGGCTTTGGCGCCAGAGTATGCTGCAGCCGCCACCGAGTTGAAGGGTGAGAATGTGATTTTGGCGAAGGTGGATGCCACGGAGGAGAATGAATTAGCCCAGAAGTACGATATTCAGGGATTCCCCACCATCTACTTCTTTGTAGATGGAGTTCACAAGCCTTATACTGGCCAGAGGACCAAAGATGCTATAGTAACCTGGATTAGGAAGAAGGCGGGACCTGGAGTACACAACATAACTACCTTGGATGATGCCGAACGCATATTGACATCTGAAAGCAAAGTTGTTTTGGGTTTCCTCAACTCTTTAGTGGGTCCTGAGAGTGAGGAGCTAGCTGCTGCATCACGACTAGAGGATGATGTCAGTTTTTATCAAACCGTGAATCCTGATGTGGCAAAACTTTTCCATATTGATTCAAATGTCAAACGCCCTGCTTTGATCCTGCTTAAGAAAGAGGATGAGAAATTGAGCCGTTTTGATGGGCAATTCACAAAATCTGCAATAGCAGATTATGTATTCTCCAACAAACTTCCTTTGGTTACAACTTTTACAAGGGAAAGTGCCCCATCGCTTTTTGAAAATCCTATCAAGAAACAGATGTTGCTGTTTGTGACATCAAATGATTCGGAGAAGCTAGTTCCATTATTTCAAGAAGCAGCAAAATCTTTCAGGGGGAAGCTGATCTTTGTACATGTGGAAATGGATAATGAAGATATTGGAAAGCCTGTTTCAGATTTTTTTGGCATCAGTGGAAATGCTCCAAAAATAGTTGCATACACAGGAAATGATGATGGAAAGAAATTTGTGTATGATGGAGAGGTGACTGTTGACAAGATTAAGGCATTTGGGGATGATTTCCTTGAAGACAAACTAAAACCTTTCTTCAGGTCAGATCCGGTTCCTGAAAATAATGATGGTGATGTGAAAATAGTGGTTGGGGATAACTTTGATGAGATTGTCTTGGATGAGTCTAAGGATGTTCTCCTTGAGATTTATGCACCTTGGTGTGGCCATTGCCAATCTCTGGAACCAACATACAACAAGCTTGCAAAACATCTGCGTGGCATCGAGTCTCTTGTCATAGCCAAGATGGATGGAACAAGTAATGAGCATCCCAGGGCAAAGCCTGATGGATTCCCTACTATTCTCTTCTTCCCGGCAGGAAATAAGAGTTTCGATCCTATTACTGTTGATACAGATCGTACAGTGGTAGCCTTTTACAAGTTCCTCAAGAAACATGCATCGATCCCATTCAAGCTCCAGAAACCAGCCTCAACTCCAAAACCCGGGAGTTCTGATGCCAAAGAGAGTCAGAGTAGCAGCAGCGATGTGAAGGATGAATTATGA 3657 0.4375 MLRVGERVTAEVGAFLSIMAEGFWHVTSLSMCQLVIACGLLSHVTFSLVLHPTASFAFIQYYTMDNTFFSHVNSLSHLSLFLLFPLGQVVYILTISSAYSGFFLEYASPKAVLDKTCGFDQCLASMFWLAFPLGHHVYTWESFGIWKSISLSGEFRGGQLCPFRKQLCYLTSDNANQILKVKGAGLVFPDVRQSGLIDVKNLEYHLFEKSRYAWQSTAIHMSIGKYPCQRQWACLSCHELRDPGAFSLGIAAKLGGNNNDVPTLTPLQEDQVHRPGGIKVAAIVGGVVATLVVIVVAVIVYVCLMRVKRFMRQTSETASSNPSPTVELGIGNTSQYVGALSPCDAQNIRQFAILELEQATRNFSPSNLVGEGRFGLVYKGLLHDGSIVAIKRRQFALTHSFIRQVRQIADIHHIHLVKLIGYYEDSNQQLLVHEYLPNGNVGNHLYDSEGLPIGKLDMRRRLCIALGASKGLEHLHSLVPPLVHTHFRTRNVIVDESFTAKVSDYGFCKIQNNADHAGSSSNIDCFLDQELNFSQDFSEKSDVYSFGVFLLEMISGREAHNRNLSNSQEDMVFQAKNSDDWDKFVDITLGVHEKEAARKVMELALLQTLFPNSRKPNSLSQTDRSLFLGDQQFSTQSINPSKMQRRRLVVVLSLTTLLLLSSFSLTLCKSVENDADDEDLSFLEEADDSSTSHHDDRYPDLDQFDDDSIDDEVLGDFSGFDESDADTEAYKEPEVDDKDVAVLRESNFSDVVKKNQFVMVEFYAPWCGHCQALAPEYAAAATELKGENVILAKVDATEENELAQKYDIQGFPTIYFFVDGVHKPYTGQRTKDAIVTWIRKKAGPGVHNITTLDDAERILTSESKVVLGFLNSLVGPESEELAAASRLEDDVSFYQTVNPDVAKLFHIDSNVKRPALILLKKEDEKLSRFDGQFTKSAIADYVFSNKLPLVTTFTRESAPSLFENPIKKQMLLFVTSNDSEKLVPLFQEAAKSFRGKLIFVHVEMDNEDIGKPVSDFFGISGNAPKIVAYTGNDDGKKFVYDGEVTVDKIKAFGDDFLEDKLKPFFRSDPVPENNDGDVKIVVGDNFDEIVLDESKDVLLEIYAPWCGHCQSLEPTYNKLAKHLRGIESLVIAKMDGTSNEHPRAKPDGFPTILFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPASTPKPGSSDAKESQSSSSDVKDEL 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0346 1218 Gene3D Phosphorylase Kinase; domain 1 338 435 - -
Glsi04g0346 1218 Gene3D Glutaredoxin 1073 1186 - -
Glsi04g0346 1218 SUPERFAMILY Thioredoxin-like 733 843 IPR036249 -
Glsi04g0346 1218 SUPERFAMILY Protein kinase-like (PK-like) 346 574 IPR011009 -
Glsi04g0346 1218 ProSiteProfiles Thioredoxin domain profile. 720 843 IPR013766 -
Glsi04g0346 1218 FunFam Protein disulfide-isomerase 1073 1186 - -
Glsi04g0346 1218 CDD PDI_b'_family 967 1057 - -
Glsi04g0346 1218 FunFam Protein disulfide-isomerase 947 1072 - -
Glsi04g0346 1218 Gene3D Glutaredoxin 728 842 - -
Glsi04g0346 1218 MobiDBLite consensus disorder prediction 686 701 - -
Glsi04g0346 1218 Pfam Protein tyrosine and serine/threonine kinase 368 568 IPR001245 GO:0004672|GO:0006468
Glsi04g0346 1218 MobiDBLite consensus disorder prediction 1190 1218 - -
Glsi04g0346 1218 Pfam Thioredoxin-like domain 881 1053 - -
Glsi04g0346 1218 CDD PDI_a_PDI_a'_C 1078 1180 - -
Glsi04g0346 1218 Gene3D Glutaredoxin 944 1072 - -
Glsi04g0346 1218 ProSiteProfiles Thioredoxin domain profile. 1056 1185 IPR013766 -
Glsi04g0346 1218 PANTHER PROTEIN DISULFIDE ISOMERASE 658 1217 - -
Glsi04g0346 1218 Pfam Thioredoxin 1078 1163 IPR013766 -
Glsi04g0346 1218 Pfam Thioredoxin 740 840 IPR013766 -
Glsi04g0346 1218 NCBIfam protein disulfide-isomerase domain 744 841 IPR005788 GO:0003756
Glsi04g0346 1218 PRINTS Thioredoxin family signature 758 766 - -
Glsi04g0346 1218 PRINTS Thioredoxin family signature 807 818 - -
Glsi04g0346 1218 PRINTS Thioredoxin family signature 766 775 - -
Glsi04g0346 1218 Gene3D Glutaredoxin 843 943 - -
Glsi04g0346 1218 Gene3D Transferase(Phosphotransferase) domain 1 436 623 - -
Glsi04g0346 1218 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Glsi04g0346 1218 FunFam Protein disulfide-isomerase 729 841 - -
Glsi04g0346 1218 SUPERFAMILY Thioredoxin-like 848 957 IPR036249 -
Glsi04g0346 1218 FunFam protein disulfide-isomerase A2 842 946 - -
Glsi04g0346 1218 ProSiteProfiles Protein kinase domain profile. 363 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0346 1218 CDD PDI_b_family 846 945 - -
Glsi04g0346 1218 MobiDBLite consensus disorder prediction 685 707 - -
Glsi04g0346 1218 CDD PDI_a_family 742 838 - -
Glsi04g0346 1218 ProSitePatterns Thioredoxin family active site. 759 777 IPR017937 -
Glsi04g0346 1218 ProSitePatterns Thioredoxin family active site. 1098 1116 IPR017937 -
Glsi04g0346 1218 SUPERFAMILY Thioredoxin-like 945 1075 IPR036249 -
Glsi04g0346 1218 NCBIfam protein disulfide-isomerase 738 1218 IPR005792 GO:0003756
Glsi04g0346 1218 SUPERFAMILY Thioredoxin-like 1073 1185 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0346 Glsi-ChrGlsi04 2200985 2210815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0346 280 605 Receptor kinase-like Gene Family AT1G79620 33.333 4.71e-44 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Glsi04g0346 PK_Tyr_Ser-Thr 2.4e-30 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1709 14 17441045 17445382 Glsi04g0346 04 2200985 2210815 CCT