Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0341 ATGAATACTGAGGAAAAGCCCGTGAGTGAGGGAAACGATGCGGTTTCGTGCCAAAGAACAGTTTCTCTTCCAGTTCCCAAGGCTAATGATCCGTTGGGGACTGAAGAATCCACACATGTTCGTCGTTGGAAGCGACAGAATCTTTTCCTTGAAATACCTTCAAGAACATCGGAAGAGTCTTCTCAGGATTTTGTAGCAATCAAGATGCCTCACACACCAAGTCCTCCAACTCCAACTCCAACTCCCACTCCCAAGAGAGTGAATTTTCTAGTGACTTCTCTCTCTGTTGATGCCCCAATTAATAATTCTCCAGGGCCTTCCACATCAAGAGGAAGACCATCCATAAGAAATATCTTACCAAAGTTGAGCTTCAGGTATCGGACTTCATCGGATACTGAAAAGGCTTCGACTGCAACTCCAGAAGGTTCCTCTTCTGGCCCTCGAGAAAAGCCTTCAATCTCAAGAACATTGTCCCTTACTAAGATATTTACTCCTAGGATTAAGAGGACGTCATCATTACCAGTAGATGACATAACACATTCAAATCCAGAATCTGTTCGTGTTGGAAGTGTTGGGGATTCTCTACACAGAAGAGAGGCTCAGGGTAAGATAGCTCGCTCTCTTTCAGTGCCTGTCAACAATAAAGAAAAAGGCATAAGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACCCCTCGAGTGAAGGAAGGAATTGAATTGCCAACCACATCCCCAACAAAGGATTCTGAAAATGATGTTGATGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAAACGTTTAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTAGCACACCAAGAATGCGCTATTAAATGGTTTAGCATCAAGGGAAACAAGACCTGTGATGTGTGCAAGCAGGAGGTTCAAAACCTTCCTGTCACCCTCTTACGGATCCAAAGTGTTCGAGCTCGGAATACTGGAGCGAGTAGGTCTCTGCAGGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTGCCAGTTCTAGTCATTGTCAGCATGCTCGCCTATTTCTGTTTTCTTGAGCAGCTGTTGGTTGGTAAAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTTTACTCTCTTCCATGACGTCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTACAGTTTGCTCTGGTGGTTCTTTTCGCTCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATTCTTCTTGCAACCTTTGCTGGGTTTGGTGTGGTAATGAGTGGGAGTTCTATTCTTGTCGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTTATCAGAGCAGAATCACGGTCCTCAGGTGATGGCACAAGCAGGACACTTCCCCAGAACTGTAAATCCACCCCATTCAGGCTCTTCAACCCCCAGGCAAACCATGGCGCAAAATCAACAAAACTCAAGTCTCTAG 1545 0.4472 MNTEEKPVSEGNDAVSCQRTVSLPVPKANDPLGTEESTHVRRWKRQNLFLEIPSRTSEESSQDFVAIKMPHTPSPPTPTPTPTPKRVNFLVTSLSVDAPINNSPGPSTSRGRPSIRNILPKLSFRYRTSSDTEKASTATPEGSSSGPREKPSISRTLSLTKIFTPRIKRTSSLPVDDITHSNPESVRVGSVGDSLHRREAQGKIARSLSVPVNNKEKGIRRMDSFFRVIPSTPRVKEGIELPTTSPTKDSENDVDDGEDIAEEEAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRARNTGASRSLQEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQALSEQNHGPQVMAQAGHFPRTVNPPHSGSSTPRQTMAQNQQNSSL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0341 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Glsi04g0341 514 CDD RING_CH-C4HC3_MARCH 267 315 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 174 193 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 96 114 - -
Glsi04g0341 514 SUPERFAMILY RING/U-box 263 318 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 174 188 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 123 157 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 485 514 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 492 514 - -
Glsi04g0341 514 SMART ringv_2 266 315 IPR011016 GO:0008270
Glsi04g0341 514 MobiDBLite consensus disorder prediction 1 39 - -
Glsi04g0341 514 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Glsi04g0341 514 MobiDBLite consensus disorder prediction 96 157 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 53 83 - -
Glsi04g0341 514 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Glsi04g0341 514 PANTHER OS02G0165000 PROTEIN 30 482 - -
Glsi04g0341 514 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0341 Glsi-ChrGlsi04 2179540 2184738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0341 194 321 C3H Transcription Factor Family AT2G37950 31.008 7.26e-14 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1712 14 17455447 17461823 Glsi04g0341 04 2179540 2184738 CCT