Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Glsi04g0341 | ATGAATACTGAGGAAAAGCCCGTGAGTGAGGGAAACGATGCGGTTTCGTGCCAAAGAACAGTTTCTCTTCCAGTTCCCAAGGCTAATGATCCGTTGGGGACTGAAGAATCCACACATGTTCGTCGTTGGAAGCGACAGAATCTTTTCCTTGAAATACCTTCAAGAACATCGGAAGAGTCTTCTCAGGATTTTGTAGCAATCAAGATGCCTCACACACCAAGTCCTCCAACTCCAACTCCAACTCCCACTCCCAAGAGAGTGAATTTTCTAGTGACTTCTCTCTCTGTTGATGCCCCAATTAATAATTCTCCAGGGCCTTCCACATCAAGAGGAAGACCATCCATAAGAAATATCTTACCAAAGTTGAGCTTCAGGTATCGGACTTCATCGGATACTGAAAAGGCTTCGACTGCAACTCCAGAAGGTTCCTCTTCTGGCCCTCGAGAAAAGCCTTCAATCTCAAGAACATTGTCCCTTACTAAGATATTTACTCCTAGGATTAAGAGGACGTCATCATTACCAGTAGATGACATAACACATTCAAATCCAGAATCTGTTCGTGTTGGAAGTGTTGGGGATTCTCTACACAGAAGAGAGGCTCAGGGTAAGATAGCTCGCTCTCTTTCAGTGCCTGTCAACAATAAAGAAAAAGGCATAAGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACCCCTCGAGTGAAGGAAGGAATTGAATTGCCAACCACATCCCCAACAAAGGATTCTGAAAATGATGTTGATGATGGTGAAGATATAGCTGAAGAAGAGGCTGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAAACGTTTAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTAGCACACCAAGAATGCGCTATTAAATGGTTTAGCATCAAGGGAAACAAGACCTGTGATGTGTGCAAGCAGGAGGTTCAAAACCTTCCTGTCACCCTCTTACGGATCCAAAGTGTTCGAGCTCGGAATACTGGAGCGAGTAGGTCTCTGCAGGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTGCCAGTTCTAGTCATTGTCAGCATGCTCGCCTATTTCTGTTTTCTTGAGCAGCTGTTGGTTGGTAAAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTTTACTCTCTTCCATGACGTCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTACAGTTTGCTCTGGTGGTTCTTTTCGCTCATATATTTTACTCCTTGGTTCATGTGCAAGCAGTTCTGTCAATTCTTCTTGCAACCTTTGCTGGGTTTGGTGTGGTAATGAGTGGGAGTTCTATTCTTGTCGAGTTCTTCAGATGGAGAAGAAGATGGCAGGCTTTATCAGAGCAGAATCACGGTCCTCAGGTGATGGCACAAGCAGGACACTTCCCCAGAACTGTAAATCCACCCCATTCAGGCTCTTCAACCCCCAGGCAAACCATGGCGCAAAATCAACAAAACTCAAGTCTCTAG | 1545 | 0.4472 | MNTEEKPVSEGNDAVSCQRTVSLPVPKANDPLGTEESTHVRRWKRQNLFLEIPSRTSEESSQDFVAIKMPHTPSPPTPTPTPTPKRVNFLVTSLSVDAPINNSPGPSTSRGRPSIRNILPKLSFRYRTSSDTEKASTATPEGSSSGPREKPSISRTLSLTKIFTPRIKRTSSLPVDDITHSNPESVRVGSVGDSLHRREAQGKIARSLSVPVNNKEKGIRRMDSFFRVIPSTPRVKEGIELPTTSPTKDSENDVDDGEDIAEEEAVCRICLVDLCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKQEVQNLPVTLLRIQSVRARNTGASRSLQEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSLVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWQALSEQNHGPQVMAQAGHFPRTVNPPHSGSSTPRQTMAQNQQNSSL | 514 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Glsi04g0341 | 514 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 322 | IPR013083 | - | |
Glsi04g0341 | 514 | CDD | RING_CH-C4HC3_MARCH | 267 | 315 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 174 | 193 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 96 | 114 | - | - | |
Glsi04g0341 | 514 | SUPERFAMILY | RING/U-box | 263 | 318 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 174 | 188 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 123 | 157 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 485 | 514 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 492 | 514 | - | - | |
Glsi04g0341 | 514 | SMART | ringv_2 | 266 | 315 | IPR011016 | GO:0008270 | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Glsi04g0341 | 514 | Pfam | RING-variant domain | 267 | 314 | IPR011016 | GO:0008270 | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 96 | 157 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 53 | 83 | - | - | |
Glsi04g0341 | 514 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 259 | 321 | IPR011016 | GO:0008270 | |
Glsi04g0341 | 514 | PANTHER | OS02G0165000 PROTEIN | 30 | 482 | - | - | |
Glsi04g0341 | 514 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Glsi04g0341 | Glsi-ChrGlsi04 | 2179540 | 2184738 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Glsi04g0341 | 194 | 321 | C3H Transcription Factor Family | AT2G37950 | 31.008 | 7.26e-14 | 68.9 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Glsi14g1712 | 14 | 17455447 | 17461823 | Glsi04g0341 | 04 | 2179540 | 2184738 | CCT |