Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0340 ATGGCGGAATCTGTCGATAGTGAACTTTCACTTTCTTGTTCTAAAACCCTAAGCCCTTCCGATCCAATCAACGGTTCCCCTTCGCTCGTTCTTTCGCATCAAACTGCCGCCGAAAACACTCAAATCCATCAGGAAACTTTCACTTCGAGTGAACAACCTTCCGACGATGTCGTTTCAGTCGAGAAACGGAAGAGGGAAGACTTTGAGTCCGAGGACGCAGATCGTTCTCTGCATCCATTATGGAAAACCAGTCTCTGTTCTTATTTCCGCCGCCAAGATGGCTCCTGTAGCCATGGCAGCGCATGCCGCTACGCCCACGGCGAGGAGGAACTTCGCCCTCGTCCCGATAACACTTGGGACCCAACGTCTGAGCGGGCAAAGAAGGCAATGAAATCCGAGACGGGCGAGAAATGCTCTGTTTCCAACGGAGTTATGATGACTGAGGCTGTAGTTGATGATGCTGATGCCGAGGACAATGATGGTTCCAACCACGCGCTTAGCAAATGCTTGGGTATACCTTTTAAATCTGCAAAGAAAAAGAAAGGTATGTTGGTAGGATTTGTCACTTTTGAAGATGAAGAACAGTTGAAGGGCTCATCAATGGAGCTGGAAGGGAAAACTATTGGCAGCAGAAGGTTAAAGGTTGCTGATGTCATTCCCCGATCATTTGAAAAGAAAAGTAACACAATTGTCACTCAAGAATCCCCACAAAATACAGATGCTGCAGTACCTAAGGATAATGCTAGTATCCGTGTTCCCTCAAATGGGACTGTAGATGGTGAGAGAAATGATGCCCATTTGGCAGTTCACGGTTCCATGTCAAAGATAAAAAACCTACGTGATGTAGTGACTCCTCTAGCTCATATGCCCTATGATGATCAGTTAGAGCACAAAAAAAGCTCTCTCATGCAGCTTCTCAAAAAACTTACTAGAAATGCTCGTAAAGCTTGTCCAAGTGGCATTTCTCTTCCTGAGTGGATTCTCAAGTCTAGGGACATAGGTGGTCTTCCTTGCAAACTAGAGGGTATTATTGGATCTCCAATTGTAAATGGGTATCGTAACAAGTGTGAATTTTCAGTTGGATATTCTCTAGAAGGCAAAATAACAGTGGGATTCATGCTTGGAAACTTTAGGGAGGGTGTAACAGCAGTTGAGGAAGCTGTAGACTGCCCAAATGTTTCTACAGTTGCTAGCCAGTACGCTTCAATCTTTCAGGAATTTCTGCAGCATTCAAACTTACCAGTTTGGAACAGATTTAAGAATACCGGATTTTGGCGTCAATTGACGGTTCGAGAAGGTAGGACAAATGGGAAGGTTACAGATGCTGAAAATTCTGGTGGTATTGCAGAGGTTATGCTTATTGTGCAGGTTTCTAGTGTGGGCTTTGATGATGGGCTAGTAACTGGTGAACTTGAGGGGCTTGCTCAAGCATTTGTTGCAGGAGATATTGCTTGTTCTCCACCATTGCCTCTCACGGATCTGGTTGTACAGGATCACCAAGGAATATCCAATGTAGCCCCAGCTGATGCGCCACTGCGCTCACTTCTCAATCCTAAAGCAGTTGGTGATCAAATGGATGAAAACAATAGTGCCATGGATGTAAGAATCCATGATTATATCAGCAATCTCCAGTTCTCTATATCTCCAACAGCATTTTTCCAGGTTAACACTCTAGCTGCGGAGAAGTTGTACTCACTTGCTGGAGATTGGGCAGGCTTAGGTCCTGATACGTTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACCTTAGCACATCGAGTTGGTATGGTGATTGGTATTGAAATGAATGCTTCTGCAGTATCTGATGCTCATAGGAATGCTGAGATTAATGGCATAAAAAATTGTAGATTTATATGTGCAAAGGCAGAGGACGTGATTGGATCTCTGTTAAAGGAGTACCTAAATGAGCCTAAAGAACAAGTTAATGTTCCTAGTATCTCTGGAACTAGAATTGAAGAAGTTTCTGAGGGAAGTGCATGCCATGAAACTGAAAATGGTGAAGGAGCATCACAGTGTTCAGAAAATGACAAGCAAGAGGATGGAAGTGAGGTTGAGAAGGGTAGCAATTCTGAAAATGGGAATACTTCGGTGCAACAATTTAAAAATGTTGTTGCTATTGTTGACCCTCCACGTGCTGGACTCCACCCAACTGTGATCAAAGCTCTCAGAACTCATCCACGTCTGCGAAGGCTTGTTTACATATCCTGTAATCCTGAAAGTTTGGTTGCAAATGCTATTGAGCTTTGTACACCATCTCCTGAGAAAATTGAAAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCAGGTCTTGCACGACATAGGGCCAAGTCTATGCCTATCTCAGAGGCCTTCCAACCCATAAAAGCTATGGCTGTTGATCTATTTCCACATACTGAACACTGCGAATTGGTGATGCTCCTTGAGAGTGAACAAGACAATGGGTGGAATATGTTTGCTTTGGACAAAGAATATATGTGGACCTCAAAAGGTGCAAAATCGCTATATCTTGTGAGTGGACCTGAAAGACCCCCTGCTCCCACCACCTCACTTTTTTGGATTTCAATTTTCTGGGGTGCGCTGCGGGAAAATAAGAAACGGGTCTTACAACTTGTTGACAATGGAATTAGTAAGACCACTGGGATGGTCATTCCCACCTTGCATGCCAGATTGGGTACATTTCCTACTGGACATTCACTTGCACCTTCTAAGGAGGCTCATGAAAGTGCAGCCACCAAAGCACCTGCGAGCTTTACGCTTCTCCAGTTATAA 2811 0.4418 MAESVDSELSLSCSKTLSPSDPINGSPSLVLSHQTAAENTQIHQETFTSSEQPSDDVVSVEKRKREDFESEDADRSLHPLWKTSLCSYFRRQDGSCSHGSACRYAHGEEELRPRPDNTWDPTSERAKKAMKSETGEKCSVSNGVMMTEAVVDDADAEDNDGSNHALSKCLGIPFKSAKKKKGMLVGFVTFEDEEQLKGSSMELEGKTIGSRRLKVADVIPRSFEKKSNTIVTQESPQNTDAAVPKDNASIRVPSNGTVDGERNDAHLAVHGSMSKIKNLRDVVTPLAHMPYDDQLEHKKSSLMQLLKKLTRNARKACPSGISLPEWILKSRDIGGLPCKLEGIIGSPIVNGYRNKCEFSVGYSLEGKITVGFMLGNFREGVTAVEEAVDCPNVSTVASQYASIFQEFLQHSNLPVWNRFKNTGFWRQLTVREGRTNGKVTDAENSGGIAEVMLIVQVSSVGFDDGLVTGELEGLAQAFVAGDIACSPPLPLTDLVVQDHQGISNVAPADAPLRSLLNPKAVGDQMDENNSAMDVRIHDYISNLQFSISPTAFFQVNTLAAEKLYSLAGDWAGLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICAKAEDVIGSLLKEYLNEPKEQVNVPSISGTRIEEVSEGSACHETENGEGASQCSENDKQEDGSEVEKGSNSENGNTSVQQFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPEKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTEHCELVMLLESEQDNGWNMFALDKEYMWTSKGAKSLYLVSGPERPPAPTTSLFWISIFWGALRENKKRVLQLVDNGISKTTGMVIPTLHARLGTFPTGHSLAPSKEAHESAATKAPASFTLLQL 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0340 936 MobiDBLite consensus disorder prediction 56 74 - -
Glsi04g0340 936 ProSitePatterns RNA methyltransferase trmA family signature 1. 718 750 IPR030390 -
Glsi04g0340 936 Gene3D Vaccinia Virus protein VP39 518 823 IPR029063 -
Glsi04g0340 936 MobiDBLite consensus disorder prediction 1 74 - -
Glsi04g0340 936 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 282 824 IPR010280 GO:0006396|GO:0008173
Glsi04g0340 936 ProSiteProfiles Zinc finger C3H1-type profile. 80 109 IPR000571 GO:0046872
Glsi04g0340 936 MobiDBLite consensus disorder prediction 113 136 - -
Glsi04g0340 936 SMART c3hfinal6 80 108 IPR000571 GO:0046872
Glsi04g0340 936 MobiDBLite consensus disorder prediction 663 707 - -
Glsi04g0340 936 Gene3D - 74 114 - -
Glsi04g0340 936 MobiDBLite consensus disorder prediction 113 134 - -
Glsi04g0340 936 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 108 IPR000571 GO:0046872
Glsi04g0340 936 Coils Coil 292 312 - -
Glsi04g0340 936 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 98 823 IPR045850 -
Glsi04g0340 936 SUPERFAMILY CCCH zinc finger 78 113 IPR036855 GO:0046872
Glsi04g0340 936 CDD AdoMet_MTases 581 635 - -
Glsi04g0340 936 MobiDBLite consensus disorder prediction 1 55 - -
Glsi04g0340 936 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 284 822 IPR029063 -
Glsi04g0340 936 Pfam Methyltransferase domain 579 637 IPR025714 -
Glsi04g0340 936 Pfam tRNA (Uracil-5-)-methyltransferase 708 758 IPR010280 GO:0006396|GO:0008173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi04g0340 tRNA_U5-meth_tr 1.4e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0340 04 2167460 2176561 Glsi04g0340 04 2167460 2176561 ECH